RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SMN1Q16637 294 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 FAM214BQ7L5A3 538 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 NANOGNBQ7Z5D8 188 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 OR6V1Q8N148 313 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 UBE2J2Q8N2K1 259 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 GALNT11Q8NCW6 608 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SDR9C7Q8NEX9 313 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ZNF519Q8TB69 540 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SGCDQ92629 289 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 WNT2BQ93097 391 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ZNF570Q96NI8 536 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 OXGR1Q96P68 337 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ERMAPQ96PL5 475 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 ALKBH3Q96Q83 286 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 TEX12Q9BXU0 123 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 NDEL1Q9GZM8 345 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 RIBC2Q9H4K1 309 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PAPOLBQ9NRJ5 636 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 KRT84Q9NSB2 600 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 FAM118AQ9NWS6 357 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 FOXD3Q9UJU5 478 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 MCTS1Q9ULC4 181 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 MGAT4BQ9UQ53 548 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 LOC102725191A0A1B0GVB3 256 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SH3D21A4FU49 640 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ARRDC5A6NEK1 342 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ZAR1LA6NP61 321 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 E9PLN8 166 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 WDR1O75083 606 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SMNDC1O75940 238 aaKnown RBP eCLIP3.55□□□□□ -1.84
LIG4-201ENST00000356922 IL18BPO95998 194 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 FCGR1AP12314 374 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ANXA8P13928 327 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CTLA4P16410 223 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ZNF43P17038 809 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CDH2P19022 906 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 TIMP3P35625 211 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PEX19P40855 299 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 DOC2BQ14184 412 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 HIST3H3Q16695 136 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 C1QTNF12Q5T7M4 302 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 UGT2A3Q6UWM9 527 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PM20D2Q8IYS1 436 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SCAIQ8N9R8 606 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 OR9Q1Q8NGQ5 310 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 FANK1Q8TC84 345 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ASB10Q8WXI3 467 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 MUS81Q96NY9 551 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 IL4I1Q96RQ9 567 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 KCNK17Q96T54 332 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 VKORC1Q9BQB6 163 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 IFT27Q9BW83 186 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 NUAK2Q9H093 628 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SYT4Q9H2B2 425 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 VCXQ9H320 206 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 TP63Q9H3D4 680 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 AMBNQ9NP70 447 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 INIPQ9NRY2 104 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ZNF226Q9NYT6 803 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 OTOGQ6ZRI0 2925 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 M0R3G1 203 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ARHGEF9O43307 516 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 EIF1BO60739 113 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 SS18L1O75177 396 aaPredicted RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 TRMUO75648 421 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 NDUFB2O95178 105 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CD14P08571 375 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PGA4P0DJD7 388 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 PGA3P0DJD8 388 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 RPS6KA3P51812 740 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 HCCSP53701 268 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ADARB1P78563 741 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 MVKQ03426 396 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 TFF3Q07654 80 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CRMP1Q14194 572 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 MEP1BQ16820 701 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 HIST2H2BCQ6DN03 193 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 NIPAL3Q6P499 406 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SVOPLQ8N434 492 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 LNX2Q8N448 690 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 OR52E2Q8NGJ4 325 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 OR6S1Q8NH40 331 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 APH1BQ8WW43 257 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 RBM4Q9BWF3 364 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 ASPNQ9BXN1 380 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 TXNIPQ9H3M7 391 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 NELFAQ9H3P2 528 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CRLF2Q9HC73 371 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SRA1Q9HD15 236 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 RASSF1Q9NS23 344 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 ASB6Q9NWX5 421 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 TVP23BQ9NYZ1 205 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 USE1Q9NZ43 259 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 COQ3Q9NZJ6 369 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 NDRG4Q9ULP0 352 aaKnown RBP3.55□□□□□ -1.84
LIG4-201ENST00000356922 CORINQ9Y5Q5 1042 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 CDH10Q9Y6N8 788 aa3.55□□□□□ -1.84
LIG4-201ENST00000356922 SLC22A23A1A5C7 686 aa3.54□□□□□ -1.84
LIG4-201ENST00000356922 SURF4O15260 269 aa3.54□□□□□ -1.84
LIG4-201ENST00000356922 APOL3O95236 402 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms