RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 C1RP00736 705 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 HMGCLP35914 325 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 NSUN5P2Q63ZY6 315 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 JMJD6Q6NYC1 403 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 FAM86B1Q8N7N1 296 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 RNASEH2CQ8TDP1 164 aaKnown RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SMIM12Q96EX1 92 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PEBP4Q96S96 227 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 METTL9Q9H1A3 318 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 GDF2Q9UK05 429 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 TCFL5Q9UL49 500 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PIEZO2Q9H5I5 2752 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 TEX13DA0A0J9YY54 714 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 TRAF3IP2O43734 574 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 TBX19O60806 448 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 BSGP35613 385 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 EMP1P54849 157 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SKP2Q13309 424 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 GK2Q14410 553 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SOWAHAQ2M3V2 549 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 MPPE1Q53F39 396 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 REEP3Q6NUK4 255 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PDZD3Q86UT5 571 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 KCNMB4Q86W47 210 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 OR1J2Q8NGS2 313 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 DUSP19Q8WTR2 217 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 EXOSC3Q9NQT5 275 aaKnown RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 KCNG2Q9UJ96 466 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CMAHPQ9Y471 501 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 UBIAD1Q9Y5Z9 338 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 MUC21A0A0G2JKD1 596 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 MUC21A0A140T8X8 626 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CYC1P08574 325 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 UBBP0CG47 229 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 UBCP0CG48 685 aaKnown RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PYCR1P32322 319 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 RPS27AP62979 156 aaKnown RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 UBA52P62987 128 aaKnown RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CAMK2GQ13555 558 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PNLIPRP3Q17RR3 467 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 MUC21Q5SSG8 566 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CD200R1LQ6Q8B3 271 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PSMG2Q969U7 264 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PRSS21Q9Y6M0 314 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 LATS1O95835 1130 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SNCAP37840 140 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PRPS1P60891 318 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 TGM3Q08188 693 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SRSF9Q13242 221 aaKnown RBP eCLIP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 OR4D1Q15615 310 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 C17orf107Q6ZR85 190 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SLC5A8Q8N695 610 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 C15orf54Q8N8G6 183 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 BLNKQ8WV28 456 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CTDSP1Q9GZU7 261 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 ING1Q9UK53 422 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 GLTPD2A6NH11 291 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF850A8MQ14 1090 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 OR1F1O43749 312 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 HBP1O60381 514 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CLN3Q13286 438 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 MOB3CQ70IA8 216 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 WNT8BQ93098 351 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SOSTQ9BQB4 213 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 OR51J1Q9H342 316 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 WNT16Q9UBV4 365 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 A0A0G2JMP0 313 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 A1L4Q6 167 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 G3V3Y1 287 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 GASTP01350 101 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 DDCP20711 480 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 OR10A3P58181 314 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CEBPEQ15744 281 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 ADIPOQQ15848 244 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 HNRNPA1L2Q32P51 320 aaKnown RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PLCXD3Q63HM9 321 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 BHLHE23Q8NDY6 225 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 HLA-DQB2P05538 268 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 DAPP51397 102 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 RAB32Q13637 225 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 C16orf54Q6UWD8 224 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 DPPA3Q6W0C5 159 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF454Q8N9F8 522 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 RAB3CQ96E17 227 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 MIXL1Q9H2W2 232 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 RLIMQ9NVW2 624 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF729A6NN14 1252 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 GGT1P19440 569 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 FFAR4Q5NUL3 377 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PRR27Q6MZM9 219 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 DEFB132Q7Z7B7 95 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 FJX1Q86VR8 437 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 PURGQ9UJV8 347 aaKnown RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SERTM2A0A1B0GWG4 89 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 CFPP27918 469 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 SLC8B1Q6J4K2 584 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 LINC00518Q8N0U6 118 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 ANKLE1Q8NAG6 615 aa3.27□□□□□ -1.89
SYNE1-201ENST00000341594 NOL4LQ96MY1 436 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-201ENST00000341594 OR2AG1Q9H205 316 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms