RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PSME2Q9UL46 239 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 KIAA1257Q9ULG3 409 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ASF1AQ9Y294 204 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 POLDIP2Q9Y2S7 368 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 KNDC1Q76NI1 1749 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 NACAE9PAV3 2078 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 VCANP13611 3396 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 USP47Q96K76 1375 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 KIAA1551Q9HCM1 1747 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 A0A1B0GUS0 222 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 OR2AG2A6NM03 316 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 USP27XA6NNY8 438 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 IDSB3KWA1 339 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 L7N2F9 121 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 HIP1O00291 1037 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 CASC3O15234 703 aaKnown RBP2.26□□□□□ -2.05
HMGB1-201ENST00000326004 RNF13O43567 381 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF861PO60384 105 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 WBP4O75554 376 aaKnown RBP2.26□□□□□ -2.05
HMGB1-201ENST00000326004 UPK3AO75631 287 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 LGI1O95970 557 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 NR2C1P13056 603 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 COX7A1P24310 79 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 HTR1EP28566 365 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 HTR1FP30939 366 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 CALCRP30988 508 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 RBMXP38159 391 aaKnown RBP2.26□□□□□ -2.05
HMGB1-201ENST00000326004 KIR2DS4P43632 304 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 EFNB2P52799 333 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 ENPEPQ07075 957 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 C1orf61Q13536 156 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 NSDHLQ15738 373 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 DPYSL2Q16555 572 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 NSUN5P1Q3KNT7 163 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 C6orf226Q5I0X4 101 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 CASC10Q5T4H9 136 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 LCE3EQ5T5B0 92 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 CARD17Q5XLA6 110 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 LRRC66Q68CR7 880 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 OR2A2Q6IF42 318 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 CLEC2AQ6UVW9 174 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 UQCC3Q6UW78 93 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 DHDDSQ86SQ9 333 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 PAQR7Q86WK9 346 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 KRTAP11-1Q8IUC1 163 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 PSTKQ8IV42 348 aaKnown RBP2.26□□□□□ -2.05
HMGB1-201ENST00000326004 OR2L13Q8N349 312 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 FTMTQ8N4E7 242 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 NKAPP1Q8N9T2 125 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 MFSD9Q8NBP5 474 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 BBOF1Q8ND07 529 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF740Q8NDX6 193 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 CATSPER1Q8NEC5 780 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 CCDC148Q8NFR7 591 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 OR51S1Q8NGJ8 323 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 MAIP1Q8WWC4 291 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 PEX13Q92968 403 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 MTMR9Q96QG7 549 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 MTG1Q9BT17 334 aaPredicted RBP2.26□□□□□ -2.05
HMGB1-201ENST00000326004 PARD6BQ9BYG5 372 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 AIG1Q9NVV5 245 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 PISDQ9UG56 409 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 KIF25Q9UIL4 384 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 PRPF19Q9UMS4 504 aaKnown RBP2.26□□□□□ -2.05
HMGB1-201ENST00000326004 TIMM10BQ9Y5J6 103 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 V9GY05 133 aa2.26□□□□□ -2.05
HMGB1-201ENST00000326004 ZNFX1Q9P2E3 1918 aaKnown RBP2.26□□□□□ -2.05
HMGB1-201ENST00000326004 NSD3Q9BZ95 1437 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 MTCL1Q9Y4B5 1905 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 PHLPP2Q6ZVD8 1323 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 TTC28Q96AY4 2481 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 MUC6Q6W4X9 2439 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 IGHV1OR21-1A0A087WYE8 117 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 ARPC4-TTLL3A0A0A6YYG9 625 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 A8MUA0 341 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 FAM25EA8MYX2 175 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 DCTN6O00399 190 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 UGT1A9O60656 530 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 PFKFB2O60825 505 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 DNAJB6O75190 326 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 KRT6AP02538 564 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 RBMY1CP0DJD4 496 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 ETS2P15036 469 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 GCAP28676 217 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SHMT2P34897 504 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 CCT6AP40227 531 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 RPL13AP40429 203 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SYKP43405 635 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 TPMTP51580 245 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 KPNA2P52292 529 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF133P52736 654 aaPredicted RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 ATP1B3P54709 279 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 RPS14P62263 151 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SELENOTP62341 195 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 CKAP4Q07065 602 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 PPP1R7Q15435 360 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SAMD4BQ5PRF9 694 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 C1orf220Q5T0J3 134 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 GPRC6AQ5T6X5 926 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 ANGPTL8Q6UXH0 198 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms