RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 H3F3AP84243 136 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 OR13C9Q8NGT0 318 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM59Q9BXS4 323 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SLC2A4RGQ9NR83 387 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 K7EQM0 130 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TAPBPO15533 448 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 DBHP09172 617 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 RTL10Q7L3V2 364 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 RAB3CQ96E17 227 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SGPP1Q9BX95 441 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 IGHG1P01857 330 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 MTHFD2P13995 350 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 GABRA4P48169 554 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 PCK2Q16822 640 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SLC5A12Q1EHB4 618 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 WBP2NLQ6ICG8 309 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 FAM57BQ71RH2 274 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM239Q8WW34 195 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SHDQ96IW2 340 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CMSS1Q9BQ75 279 aaKnown RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 WWTR1Q9GZV5 400 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TRBV4-1A0A0J9YWV2 114 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TOX4O94842 621 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 APBB3O95704 486 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 OR1M1Q8NGA1 313 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 OR5AR1Q8NGP9 310 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 MBOAT4Q96T53 435 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 C11orf54Q9H0W9 315 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SLCO5A1Q9H2Y9 848 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SFXN1Q9H9B4 322 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 MED17Q9NVC6 651 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 GOLT1BQ9Y3E0 138 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 LALBAP00709 142 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A6P0DMU7 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A5P0DMU8 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A7P0DMV0 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A8P0DMV1 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A9P0DMV2 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A2Q5DJT8 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A1Q5HYN5 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SFXN4Q6P4A7 337 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 NLGN4YQ8NFZ3 816 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A3Q8NHU0 189 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 FOXN4Q96NZ1 517 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 MOB1AQ9H8S9 216 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SLC35A3Q9Y2D2 325 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TCRBV5S2A0A599 114 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 KLK8O60259 260 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SNRPBP14678 240 aaKnown RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 CAMK2BQ13554 666 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 PGGHGQ32M88 737 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 KCNRGQ8N5I3 272 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 ELF4Q99607 663 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF385DQ9H6B1 395 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TAF9BQ9HBM6 251 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 INIPQ9NRY2 104 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SPHK1Q9NYA1 384 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 NUDT19A8MXV4 375 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF28P17035 718 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 OPRD1P41143 372 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 ELLP55199 621 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 OR2B8PP59922 312 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SNRPGP62308 76 aaKnown RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 PDE7AQ13946 482 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 PODNL1Q6PEZ8 512 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 SLC35F3Q8IY50 421 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM38AQ9H6F2 299 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 MED20Q9H944 212 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 A4GALTQ9NPC4 353 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 ACSS1Q9NUB1 689 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF236Q9UL36 1845 aa9.14□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM72A0PK05 275 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 KLF8O95600 359 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-201ENST00000295550 FUT1P19526 365 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 RAB5AP20339 215 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 IL2RGP31785 369 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 C17orf107Q6ZR85 190 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 P2RY12Q9H244 342 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 C1GALT1Q9NS00 363 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 POMT1Q9Y6A1 747 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 PARP14Q460N5 1801 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 OR6C68A6NDL8 312 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 OR6C76A6NM76 312 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 SULT2B1O00204 365 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 CHRM4P08173 479 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 TRAPPC2P0DI81 140 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 TRAPPC2BP0DI82 140 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 BMP1P13497 986 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 C5AR1P21730 350 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 AHRP35869 848 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 CSNK1A1P48729 337 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 ATP1B3P54709 279 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 PCBD1P61457 104 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF480Q8WV37 535 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 ARHGAP9Q9BRR9 750 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 NUMBLQ9Y6R0 609 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 ARL2-SNX15V9GYD0 113 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 TRAV20A0A0B4J274 112 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 DDAH2O95865 285 aa9.13□□□□□ -0.95
COL6A3-201ENST00000295550 C1SP09871 688 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms