RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 LINGO2Q7L985 606 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 PRSS42Q7Z5A4 293 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 ADGRG3Q86Y34 549 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 SLC38A9Q8NBW4 561 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 KLHL15Q96M94 604 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 V9GY05 133 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 EXPH5Q8NEV8 1989 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 PDCD5O14737 125 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 HLA-DQA2P01906 255 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 DCNP07585 359 aaKnown RBP18.13■□□□□ 0.49
VPS53-201ENST00000291074 MAMDC2Q7Z304 686 aaPredicted RBP18.13■□□□□ 0.49
VPS53-201ENST00000291074 OR2G2Q8NGZ5 317 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 OR8K3Q8NH51 312 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 STT3BQ8TCJ2 826 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 SLCO1C1Q9NYB5 712 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 FAM47E-STBD1D6RA91 191 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 XKRYO14609 159 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 ADAM10O14672 748 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 TCRBP04435 133 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 P2RX1P51575 399 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 RPS15P62841 145 aaKnown RBP18.13■□□□□ 0.49
VPS53-201ENST00000291074 FAPQ12884 760 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 MRPL28Q13084 256 aaKnown RBP18.13■□□□□ 0.49
VPS53-201ENST00000291074 PTCRAQ6ISU1 281 aaPredicted RBP18.13■□□□□ 0.49
VPS53-201ENST00000291074 NUP54Q7Z3B4 507 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 KCTD20Q7Z5Y7 419 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 GPR119Q8TDV5 335 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 NSMAFQ92636 917 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 SLC7A5P2Q9GIP4 190 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 ING3Q9NXR8 418 aa18.13■□□□□ 0.49
VPS53-201ENST00000291074 OR4C45A6NMZ5 311 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 TIAF1O95411 115 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 PTHLHP12272 177 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 IL11P20809 199 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 LCN1P31025 176 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 POLR2HP52434 150 aaKnown RBP18.12■□□□□ 0.49
VPS53-201ENST00000291074 FCN2Q15485 313 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 ETFDHQ16134 617 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 HACD4Q5VWC8 232 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 BICRALQ6AI39 1079 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 TIGD3Q6B0B8 471 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 ZNF574Q6ZN55 896 aaPredicted RBP18.12■□□□□ 0.49
VPS53-201ENST00000291074 PRSS35Q8N3Z0 413 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 SMIM4Q8WVI0 70 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 ADAMTS14Q8WXS8 1223 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 TCF7L1Q9HCS4 588 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 TRAV8-7A0A075B6U6 113 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 S100A1P23297 94 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 GDNFP39905 211 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 GZMKP49863 264 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 RNF4P78317 190 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 MELKQ14680 651 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 SGCBQ16585 318 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 C1orf140Q5VVS0 124 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 WDR74Q6RFH5 385 aaPredicted RBP18.12■□□□□ 0.49
VPS53-201ENST00000291074 LRRN1Q6UXK5 716 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 KDM8Q8N371 416 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 CACNG6Q9BXT2 260 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 ZNF768Q9H5H4 540 aaKnown RBP18.12■□□□□ 0.49
VPS53-201ENST00000291074 TAS2R10Q9NYW0 307 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 OR5V1Q9UGF6 321 aa18.12■□□□□ 0.49
VPS53-201ENST00000291074 TRABD2BA6NFA1 517 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 NPIPB7O75200 414 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 KLF9Q13886 244 aaPredicted RBP18.11■□□□□ 0.49
VPS53-201ENST00000291074 COL28A1Q2UY09 1125 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 FAM69AQ5T7M9 428 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 FAM205BPQ63HN1 556 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 ZNF676Q8N7Q3 588 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 B9D1Q9UPM9 204 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 TRBV5-5A0A0J9YX44 114 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 K7ESF4 209 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 C1QBP02746 253 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 MAS1P04201 325 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 FBXW4P57775 412 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 INSM1Q01101 510 aaPredicted RBP18.11■□□□□ 0.49
VPS53-201ENST00000291074 ZNF417Q8TAU3 575 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 ZNF519Q8TB69 540 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 PMEPA1Q969W9 287 aa18.11■□□□□ 0.49
VPS53-201ENST00000291074 ZNF587Q96SQ5 575 aaPredicted RBP18.11■□□□□ 0.49
VPS53-201ENST00000291074 TMA7Q9Y2S6 64 aaKnown RBP18.11■□□□□ 0.49
VPS53-201ENST00000291074 FRYLO94915 3013 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 PRSS37A4D1T9 235 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 SLC16A7O60669 478 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 DHFRP00374 187 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 KIR3DL2P43630 455 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 RPL27P61353 136 aaKnown RBP18.1■□□□□ 0.49
VPS53-201ENST00000291074 MAB21L1Q13394 359 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 NDUFA5Q16718 116 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 MEP1BQ16820 701 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 PLPP5Q8NEB5 264 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 OTOSQ8NHW6 89 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 SYNPRQ8TBG9 265 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 SHDQ96IW2 340 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 WNT16Q9UBV4 365 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 OR6C76A6NM76 312 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 H0YC42 278 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 ZNF593O00488 134 aaPredicted RBP18.1■□□□□ 0.49
VPS53-201ENST00000291074 GSTZ1O43708 216 aaPredicted RBP18.1■□□□□ 0.49
VPS53-201ENST00000291074 RAD1O60671 282 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 SYPP08247 313 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms