RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 FCGR2AP12318 317 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 ICAM2P13598 275 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 CD53P19397 219 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 PRPH2P23942 346 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 CLDN17P56750 224 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 RPS18P62269 152 aaKnown RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 NKX6-1P78426 367 aaPredicted RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 PFN4Q8NHR9 129 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 GCDHQ92947 438 aaPredicted RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 ARHGAP9Q9BRR9 750 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 C20orf85Q9H1P6 137 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 C1orf123Q9NWV4 160 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 DNAJB11Q9UBS4 358 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 BOKQ9UMX3 212 aaPredicted RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 OR5K3A6NET4 321 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 TMX2-CTNND1H3BSU7 103 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 EIF4E2O60573 245 aaKnown RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 MED6O75586 246 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 IGFBP1P08833 259 aaPredicted RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 NAGAP17050 411 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 ZNF93P35789 620 aaPredicted RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 CSNK1EP49674 416 aaKnown RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 SF3B4Q15427 424 aaKnown RBP eCLIP9.9□□□□□ -0.82
CD44-201ENST00000263398 ZNF674Q2M3X9 581 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 FBXW12Q6X9E4 464 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 AAED1Q7RTV5 226 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 ADGRE4PQ86SQ3 457 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 ABHD5Q8WTS1 349 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 PSMF1Q92530 271 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 MALSU1Q96EH3 234 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 ZNF681Q96N22 645 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 ZNF385DQ9H6B1 395 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 FAM212BQ9NTI7 297 aaPredicted RBP9.9□□□□□ -0.82
CD44-201ENST00000263398 RAB22AQ9UL26 194 aa9.9□□□□□ -0.82
CD44-201ENST00000263398 TEX51A0A1B0GUA7 166 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 LCMT2O60294 686 aaKnown RBP9.9□□□□□ -0.83
CD44-201ENST00000263398 RAF1P04049 648 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 PDGFAP04085 211 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 PRKACAP17612 351 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 CHATP28329 748 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 DCDP81605 110 aaKnown RBP9.9□□□□□ -0.83
CD44-201ENST00000263398 PLA2G7Q13093 441 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 PAQR6Q6TCH4 344 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 ADGRF3Q8IZF5 1079 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 WDSUB1Q8N9V3 476 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 OR13H1Q8NG92 308 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 SLC6A18Q96N87 628 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 SSX3Q99909 188 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 MCOLN1Q9GZU1 580 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 TBC1D29Q9UFV1 150 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 PCDHGA1Q9Y5H4 931 aa9.9□□□□□ -0.83
CD44-201ENST00000263398 P2RY10O00398 339 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SELENOFO60613 162 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 LALBAP00709 142 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 CHRM2P08172 466 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SNRNP70P08621 437 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 PRR35P0CG20 571 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 EIF1P41567 113 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 DUSP8Q13202 625 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 KIAA0907Q7Z7F0 614 aaPredicted RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 LINC00346Q8IVM7 164 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SGK3Q96BR1 496 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 LRFN5Q96NI6 719 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 ELF4Q99607 663 aaPredicted RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 PAPOLGQ9BWT3 736 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 CNTNAP3Q9BZ76 1288 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PHIPQ8WWQ0 1821 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PRAMEF27A3QJZ7 478 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PRRT4C9JH25 899 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 FCMRO60667 390 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 EIF1BO60739 113 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 SCGB2A1O75556 95 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PEX11BO96011 259 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 ELK1P19419 428 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 RAB4BP61018 213 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 MFGE8Q08431 387 aaPredicted RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 TPBGQ13641 420 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 RBM39Q14498 530 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 SLC36A2Q495M3 483 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PRAMEF20Q5VT98 475 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 C1orf140Q5VVS0 124 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 PRAMEF9Q5VWM5 478 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 NPSR1Q6W5P4 371 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 GRINAQ7Z429 371 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 TMEM99Q8N816 258 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 CLEC1AQ8NC01 280 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 FYTTD1Q96QD9 318 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 GSX2Q9BZM3 304 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 SLC25A19Q9HC21 320 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 NXT1Q9UKK6 140 aaKnown RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 OR52A1Q9UKL2 312 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 TMEM184BQ9Y519 407 aaPredicted RBP9.89□□□□□ -0.83
CD44-201ENST00000263398 ARPC4-TTLL3A0A0A6YYG9 625 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 KCNK2O95069 426 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 ETHE1O95571 254 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 IL2RGP31785 369 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 BSGP35613 385 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 EPHA4P54764 986 aa9.89□□□□□ -0.83
CD44-201ENST00000263398 CASP6P55212 293 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms