RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CDX1P47902 265 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 EBPQ15125 230 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR2B11Q5JQS5 317 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FAM74A1Q5RGS3 127 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FAM160A2Q8N612 972 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR8G5Q8NG78 346 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR8U1Q8NH10 309 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PARD6AQ9NPB6 346 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OPN4Q9UHM6 478 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CA14Q9ULX7 337 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 HIDE1A8MVS5 230 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 GASTP01350 101 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR4E1P0C645 316 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ATXN1LP0C7T5 689 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FABP4P15090 132 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FABP6P51161 128 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 C21orf58P58505 322 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CATR1Q13166 79 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FCRL6Q6DN72 434 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM71Q6P5X7 295 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 USP53Q70EK8 1073 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SPTSSAQ969W0 71 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SGPP1Q9BX95 441 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 WDR76Q9H967 626 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ANKUB1A6NFN9 424 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 H3BQ06 376 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF354AO60765 605 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 DUS4LO95620 317 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 EDN1P05305 212 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NME2P22392 152 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 PRDX3P30048 256 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CD68P34810 354 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF136P52737 540 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SLC14A1Q13336 389 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 PHF19Q5T6S3 580 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FAM109BQ6ICB4 259 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TSTD1Q8NFU3 115 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF384Q8TF68 577 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 DPF1Q92782 380 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SYNPO2LQ9H987 977 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CSNK1G1Q9HCP0 422 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CENPMQ9NSP4 180 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 MARCH4Q9P2E8 410 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 LAMP3Q9UQV4 416 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR1A2Q9Y585 309 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR52A4PA6NMU1 304 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF727A8MUV8 499 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 MTX2O75431 263 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CELF2O95319 508 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ITGB2P05107 769 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ARRB2P32121 409 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 C12orf73Q69YU5 71 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 DHRS7BQ6IAN0 325 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR52E2Q8NGJ4 325 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR10Q1Q8NGQ4 319 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CLEC4DQ8WXI8 215 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 RHBGQ9H310 441 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 DMRT3Q9NQL9 472 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 LDB2O43679 373 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CFHP08603 1231 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NMBP08949 121 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SEC11BP0C7V7 166 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SIM1P81133 766 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NKAIN2Q5VXU1 208 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 RPUSD3Q6P087 351 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TFAP2EQ6VUC0 442 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CPXM2Q8N436 756 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 EXD3Q8N9H8 876 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 LRRC15Q8TF66 581 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TMED6Q8WW62 240 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TFGQ92734 400 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM106AQ96A25 262 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ESAMQ96AP7 390 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SLC25A44Q96H78 314 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 A8MVM7 634 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 DVL1O14640 695 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 PMCHP20382 165 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 RELQ04864 619 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 DOC2BQ14184 412 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TARBP2Q15633 366 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NCR3LG1Q68D85 454 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF429Q86V71 674 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FAM181AQ8N9Y4 354 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NAXEQ8NCW5 288 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR10A7Q8NGE5 316 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NUS1Q96E22 293 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NMES1Q9C002 83 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NOX4Q9NPH5 578 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NECAP2Q9NVZ3 263 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SERPINA5P05154 406 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 MMP11P24347 488 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 IFITM2Q01629 132 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 GBX1Q14549 363 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 HLA-BQ31612 363 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TRMT12Q53H54 448 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 MANEAQ5SRI9 462 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TOMM20LQ6UXN7 152 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TTLL10Q6ZVT0 673 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ANGPTL5Q86XS5 388 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR5R1Q8NH85 324 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms