RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 RPP25Q9BUL9 199 aaKnown RBP18.31■□□□□ 0.52
SYNGAP1-227ENST00000638142 A8MUA0 341 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 MCRIP1C9JLW8 97 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 XRCC3O43542 346 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 PPP1CAP62136 330 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 LTBQ06643 244 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 RBMS2Q15434 407 aaKnown RBP18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ALG10Q5BKT4 473 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ZNF227Q86WZ6 799 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ZNF417Q8TAU3 575 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 DGAT2Q96PD7 388 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 FAM60AQ9NP50 221 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 CD93Q9NPY3 652 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ING1Q9UK53 422 aaPredicted RBP18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 BLACEA4D250 179 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 C4orf47A7E2U8 309 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 H7C417 338 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ZNF254O75437 659 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 RBBP9O75884 186 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 TXNDC12O95881 172 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ITPKBP27987 946 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 DLX5P56178 289 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 CTXN1P60606 82 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 DEFB110Q30KQ9 67 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 KLHL26Q53HC5 615 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 OR5M10Q6IEU7 315 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ATG4DQ86TL0 474 aaPredicted RBP18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 C10orf53Q8N6V4 93 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 C16orf52Q8NHV5 167 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 GPBAR1Q8TDU6 330 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 MNTQ99583 582 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 C12orf4Q9NQ89 552 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 TAS2R8Q9NYW2 309 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 MTFP1Q9UDX5 166 aa18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 ZNF346Q9UL40 294 aaKnown RBP18.3■□□□□ 0.52
SYNGAP1-227ENST00000638142 EML5Q05BV3 1969 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 HEATR5AQ86XA9 2040 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 TRBV5-7A0A0A0MS05 114 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 A0A0A6YYC8 382 aaPredicted RBP18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 KIR2DS5A0A0G2JLQ3 304 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 A0A0G2JNG1 304 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 UBE2QL1A1L167 161 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 I3L1I5 382 aaPredicted RBP18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 KIR2DS3K7RE56 304 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 PGDP52209 483 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 SKP1P63208 163 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 KIR2DS5Q14953 304 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 RGS7BPQ6MZT1 257 aaPredicted RBP18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 TMEM81Q6P7N7 255 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 SDR16C5Q8N3Y7 309 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 LINC00052Q96N35 136 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 COMMD4Q9H0A8 199 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 SEMA6CQ9H3T2 930 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 WBP1LQ9NX94 342 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 STEAP1Q9UHE8 339 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 OR4C45A6NMZ5 311 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 CTSBP07858 339 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 TMIGD3P0DMS9 266 aaPredicted RBP18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 ST6GAL1P15907 406 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 SRSF5Q13243 272 aaKnown RBP18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 EMC4Q5J8M3 183 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 SLC37A2Q8TED4 501 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 OR10A5Q9H207 317 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 MMP25Q9NPA2 562 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 PRTFDC1Q9NRG1 225 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 LAMP5Q9UJQ1 280 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 SESN1Q9Y6P5 492 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 ATG2AQ2TAZ0 1938 aa18.29■□□□□ 0.52
SYNGAP1-227ENST00000638142 TMEM212A6NML5 194 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 OR5K4A6NMS3 321 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 PYCARD-AS1I3L0S3 204 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 TSPAN4O14817 238 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 CSF1P09603 554 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 AKT2P31751 481 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 NUP62P37198 522 aaPredicted RBP18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 FUT7Q11130 342 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 PCGF3Q3KNV8 242 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 OVCH2Q7RTZ1 564 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 OR2G2Q8NGZ5 317 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 MOGAT1Q96PD6 335 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 SHARPINQ9H0F6 387 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 FKRPQ9H9S5 495 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 IKZF2Q9UKS7 526 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 ERVK-19Q9WJR5 959 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 TRAV8-7A0A075B6U6 113 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 HSPB2A8KAH6 182 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 HMSDA8MTL9 139 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 B3GALNT1O75752 331 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 CDC123O75794 336 aaPredicted RBP18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 TSPAN9O75954 239 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 TNFP01375 233 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 ASAH2BP0C7U1 165 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 CSRP1P21291 193 aaKnown RBP18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 SEC61A1P61619 476 aaKnown RBP18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 EGR3Q06889 387 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 HSPB2Q16082 182 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 SLC36A1Q7Z2H8 476 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 GPR148Q8TDV2 347 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 PNPLA2Q96AD5 504 aa18.28■□□□□ 0.52
SYNGAP1-227ENST00000638142 MTIF3Q9H2K0 278 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms