RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TRAF4Q9BUZ4 470 aaPredicted RBP16.82■□□□□ 0.28
CLN3-260ENST00000637578 C1QTNF6Q9BXI9 259 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 TRIM15Q9C019 465 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 NDUFAF4Q9P032 175 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 SLC7A7Q9UM01 511 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 A4GNTQ9UNA3 340 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 ENPP4Q9Y6X5 453 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 C2CD3Q4AC94 2353 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 LRRN3E7EW58 273 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 hCG_2039718K7EN88 272 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 M0R1B8 84 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 PLPP3O14495 311 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 SLC43A1O75387 559 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 OR5F1O95221 314 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 WNT11O96014 354 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 HLA-DOBP13765 273 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 CDH2P19022 906 aaPredicted RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 PTNP21246 168 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 SH3BGRP55822 239 aaPredicted RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 SPOCK1Q08629 439 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 PMS2P3Q13401 168 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 TBRG1Q3YBR2 411 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 UEVLDQ8IX04 471 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 Q96MF0 132 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 SEPHS2Q99611 448 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 PRSS27Q9BQR3 290 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 SLC19A3Q9BZV2 496 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 POLR2J2Q9GZM3 115 aaKnown RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 POLR2J3Q9H1A7 115 aaKnown RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 NELFAQ9H3P2 528 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 GSX1Q9H4S2 264 aaPredicted RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 RIMS3Q9UJD0 308 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 ALPK2Q86TB3 2170 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 ARPC4-TTLL3A0A0A6YYG9 625 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 AQP12BA6NM10 295 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 E7EQL1 145 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 FFAR1O14842 300 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 HOXB1P14653 301 aaPredicted RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 NQO1P15559 274 aaKnown RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 FUT4P22083 530 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 ROR2Q01974 943 aaKnown RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 PUDPQ08623 228 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 IQCCQ4KMZ1 466 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 ANKRD16Q6P6B7 361 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 PXKQ7Z7A4 578 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 BIVMQ86UB2 503 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 AQP12AQ8IXF9 295 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 PIAS4Q8N2W9 510 aaPredicted RBP16.81■□□□□ 0.28
CLN3-260ENST00000637578 LRR1Q96L50 414 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 GPR35Q9HC97 309 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 FAIMQ9NVQ4 179 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 RHCGQ9UBD6 479 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 NOX1Q9Y5S8 564 aa16.81■□□□□ 0.28
CLN3-260ENST00000637578 PLCE1Q9P212 2302 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 AKAP8O43823 692 aaKnown RBP16.8■□□□□ 0.28
CLN3-260ENST00000637578 PRSS23O95084 383 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 INHBBP09529 407 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 ERFP50548 548 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 ATP5J2P56134 94 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 ZNF74Q16587 644 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 ZSCAN26Q16670 478 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 HMBOX1Q6NT76 420 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 TTC33Q6PID6 262 aaPredicted RBP16.8■□□□□ 0.28
CLN3-260ENST00000637578 SLC22A25Q6T423 547 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 C20orf196Q8IYI0 205 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 CIARTQ8N365 385 aaPredicted RBP16.8■□□□□ 0.28
CLN3-260ENST00000637578 PIK3C3Q8NEB9 887 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 OR5J2Q8NH18 312 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 COX4I2Q96KJ9 171 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 DHRS9Q9BPW9 319 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 BDH2Q9BUT1 245 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 IL1RAPQ9NPH3 570 aa16.8■□□□□ 0.28
CLN3-260ENST00000637578 CRNNQ9UBG3 495 aaPredicted RBP16.8■□□□□ 0.28
CLN3-260ENST00000637578 DIRAS1O95057 198 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 TTKP33981 857 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 ZP4Q12836 540 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 C3orf36Q3SXR2 165 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 C1orf146Q5VVC0 180 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 KLHL24Q6TFL4 600 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 B3GLCTQ6Y288 498 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 CYP4Z1Q86W10 505 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 SPATA24Q86W54 205 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 NKAIN4Q8IVV8 208 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 ADGRG5Q8IZF4 528 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 OFCC1Q8IZS5 231 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 DEPDC4Q8N2C3 294 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 C10orf53Q8N6V4 93 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 FAM169BQ8N8A8 192 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 ZNF837Q96EG3 531 aaPredicted RBP16.79■□□□□ 0.28
CLN3-260ENST00000637578 TRMT61AQ96FX7 289 aaKnown RBP16.79■□□□□ 0.28
CLN3-260ENST00000637578 TXNDC15Q96J42 360 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 FKRPQ9H9S5 495 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 TAS2R5Q9NYW4 299 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 FAM32AQ9Y421 112 aaKnown RBP16.79■□□□□ 0.28
CLN3-260ENST00000637578 NF1P21359 2839 aa16.79■□□□□ 0.28
CLN3-260ENST00000637578 MT-ND1P03886 318 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 FABP3P05413 133 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 THRBP10828 461 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 ITGA2P17301 1181 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 RHCEP18577 417 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms