RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TGFAP01135 160 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 PNMTP11086 282 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 MAP2K6P52564 334 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 CLDN20P56880 219 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 MERTKQ12866 999 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 BCL2A1Q16548 175 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 AGAP6Q5VW22 663 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 AMIGO2Q86SJ2 522 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 SLC7A13Q8TCU3 470 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 GCDHQ92947 438 aaPredicted RBP12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 NRBF2Q96F24 287 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 PRRG4Q9BZD6 226 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 REEP1Q9H902 201 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 RNPEPL1Q9HAU8 725 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 NGBQ9NPG2 151 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 PLSCR4Q9NRQ2 329 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 NKX1-2Q9UD57 310 aaPredicted RBP12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 GPR52Q9Y2T5 361 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 IGKV1D-42A0A075B6H8 117 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 A0A087WUU8 490 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 TMED7-TICAM2A0A0A6YYA0 188 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 TRBV4-1A0A0J9YWV2 114 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 SH3PXD2BA1X283 911 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 OR2M5A3KFT3 312 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 SHISA8B8ZZ34 492 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 TNFRSF11BO00300 401 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 GNGT2O14610 69 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 ZNF208O43345 1280 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 NPIPB7O75200 414 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 ATP6V1G2O95670 118 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 FCGR2AP12318 317 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 APEHP13798 732 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 IL11P20809 199 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 ELK4P28324 431 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 RBM34P42696 430 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 EGR4Q05215 589 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 PPP1R8Q12972 351 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 RAB35Q15286 201 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 SEC23BQ15437 767 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 TAB1Q15750 504 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 SGCBQ16585 318 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 RNF113BQ8IZP6 322 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 OR52J3Q8NH60 311 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 TMEM255BQ8WV15 326 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 ACOT11Q8WXI4 607 aaPredicted RBP12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 PSD2Q9BQI7 771 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 TMEM43Q9BTV4 400 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 TMED7Q9Y3B3 224 aa12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 SAMHD1Q9Y3Z3 626 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-218ENST00000598907 NOTCH1P46531 2555 aa12.21□□□□□ -0.46
SHKBP1-218ENST00000598907 TMEM72A0PK05 275 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 LINC01387J3KSC0 135 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 CASQ2O14958 399 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 BAG2O95816 211 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 IGF2P01344 180 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 PSMB1P20618 241 aaKnown RBP12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 IL32P24001 234 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 CXCR1P25024 350 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 FKBP2P26885 142 aaKnown RBP12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 PRR31Q5SQ13 230 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 ZNF770Q6IQ21 691 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 SHQ1Q6PI26 577 aaKnown RBP12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 BEND4Q6ZU67 534 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 STK32CQ86UX6 486 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 LINC00471Q8N535 108 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 STEAP2Q8NFT2 490 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 OR5K1Q8NHB7 308 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 STK35Q8TDR2 534 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 TMEM239Q8WW34 195 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 SLC19A3Q9BZV2 496 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 SEMA6AQ9H2E6 1030 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 MEPEQ9NQ76 525 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 SELENONQ9NZV5 590 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 CHRNA9Q9UGM1 479 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 ZNF337Q9Y3M9 751 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 U3KQV3 271 aa12.2□□□□□ -0.46
SHKBP1-218ENST00000598907 HTR3EA5X5Y0 456 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 ARRDC5A6NEK1 342 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 DPRXA6NFQ7 191 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 A8MVM7 634 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 SHISA9B4DS77 424 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 FZD7O75084 574 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 CLK1P49759 484 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 UGT2B15P54855 530 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 RAC1P63000 192 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 SLC34A1Q06495 639 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 SELENBP1Q13228 472 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 CARTPTQ16568 116 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 MICAQ29983 383 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 FGD3Q5JSP0 725 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 TTC33Q6PID6 262 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 TBPL2Q6SJ96 375 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 MBOAT2Q6ZWT7 520 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 LSRQ86X29 649 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 SVOPLQ8N434 492 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 SEMA6DQ8NFY4 1073 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 POTEKPQ9BYX7 375 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 GRIP2Q9C0E4 1043 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 OR10A4Q9H209 315 aa12.19□□□□□ -0.46
SHKBP1-218ENST00000598907 SERINC1Q9NRX5 453 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms