RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CYB5R1Q9UHQ9 305 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 COPS3Q9UNS2 423 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 EXOGQ9Y2C4 368 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 YARS2Q9Y2Z4 477 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 DYSFO75923 2080 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GTF3C1Q12789 2109 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 ARPC4-TTLL3A0A0A6YYG9 625 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 TRAV17A0A0B4J275 112 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 A0A0D9SEW6 157 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 PLSCR5A0PG75 271 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 PQLC2LA1A4F0 135 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 MBD3L4A6NDZ8 208 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 MBD3L5A6NJ08 208 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 GABRR3A8MPY1 467 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 HMSDA8MTL9 139 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 E7EQ34 232 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 GFYI3L273 518 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 GTPBP1O00178 669 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 PRRG2O14669 202 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 ADAM10O14672 748 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 FFAR1O14842 300 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 GPR39O43194 453 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 EEF1E1O43324 174 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 RNF13O43567 381 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SSNA1O43805 119 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 CD5LO43866 347 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 GMDSO60547 372 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 PRAMEF4O60810 478 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SOX30O94993 753 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 VENTXO95231 258 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 C6orf47O95873 294 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 ECDO95905 644 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 CFDP00746 253 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 IGHEP01854 428 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 EIF4EP06730 217 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 UBBP0CG47 229 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 UBCP0CG48 685 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 LIMS3P0CW19 117 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 LIMS4P0CW20 117 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SAGP10523 405 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 POU2F1P14859 743 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 FOLR1P15328 257 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 CXCL3P19876 107 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 FSTP19883 344 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 CD22P20273 847 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 HTR1FP30939 366 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 RORAP35398 523 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 FEN1P39748 380 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 FASLGP48023 281 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 KCNJ5P48544 419 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 MECP2P51608 486 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 BLVRAP53004 296 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 CDH11P55287 796 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 LIM2P55344 173 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 CAV3P56539 151 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 FOXL2P58012 376 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 VSX2P58304 361 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 KIAA1024LP59773 190 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 AP3S2P59780 193 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 ZP1P60852 638 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 RHOAP61586 193 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 RPS27AP62979 156 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 UBA52P62987 128 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 HBA1P69905 142 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 MRPS10P82664 201 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 ARF5P84085 180 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 FGL1Q08830 312 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 ZNF155Q12901 538 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 AIMP2Q13155 320 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 BTN1A1Q13410 526 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 KLF9Q13886 244 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 GNA13Q14344 377 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 TCTE1Q5JU00 501 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 PRR31Q5SQ13 230 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 HENMT1Q5T8I9 393 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 OR2G6Q5TZ20 316 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 PRAMEF9Q5VWM5 478 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 CXorf57Q6NSI4 855 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 CDC73Q6P1J9 531 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SLC27A4Q6P1M0 643 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 C1orf94Q6P1W5 598 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SFXN4Q6P4A7 337 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 LRFN4Q6PJG9 635 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SMARCD3Q6STE5 483 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 IGFL2Q6UWQ7 119 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 PRSS57Q6UWY2 283 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 TMIGD1Q6UXZ0 262 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 RASSF6Q6ZTQ3 369 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 PPP1R32Q7Z5V6 425 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SLC9B2Q86UD5 537 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 DOLPP1Q86YN1 238 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 KRTAP19-1Q8IUB9 90 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 MCATQ8IVS2 390 aaKnown RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 GID4Q8IVV7 300 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 CCDC36Q8IYA8 594 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 TOMM5Q8N4H5 51 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 IQCF1Q8N6M8 205 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.77□□□□□ -1.81
LIG3-211ENST00000588713 DCAF4L2Q8NA75 395 aa3.77□□□□□ -1.81
LIG3-211ENST00000588713 SLC38A9Q8NBW4 561 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms