RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 COX15Q7KZN9 410 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 CTAGE6Q86UF2 777 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 ZNF557Q8N988 423 aaPredicted RBP2.53□□□□□ -2
SMCHD1-209ENST00000583441 SDR9C7Q8NEX9 313 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 OR2L3Q8NG85 312 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 OR2G2Q8NGZ5 317 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 RAB3IL1Q8TBN0 382 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 FAM110BQ8TC76 370 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 RNF139Q8WU17 664 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 NDRG1Q92597 394 aaKnown RBP2.53□□□□□ -2
SMCHD1-209ENST00000583441 MYDGFQ969H8 173 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 RPUSD4Q96CM3 377 aaKnown RBP2.53□□□□□ -2
SMCHD1-209ENST00000583441 FAM210BQ96KR6 192 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 MS4A4EQ96PG1 132 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 HES7Q9BYE0 225 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 EML4Q9HC35 981 aaKnown RBP2.53□□□□□ -2
SMCHD1-209ENST00000583441 CCL28Q9NRJ3 127 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 XCL2Q9UBD3 114 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 CLCF1Q9UBD9 225 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 SHPKQ9UHJ6 478 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 STARD10Q9Y365 291 aa2.53□□□□□ -2
SMCHD1-209ENST00000583441 ZNF646O15015 1829 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 A0A1B0GUA9 196 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 H3BNH8 94 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 GOSR2O14653 212 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF861PO60384 105 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 C1orf105O95561 183 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 AGTP01019 485 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 ALDOBP05062 364 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 TPM2P07951 284 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 PNMA6AP0CW24 399 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 MGMTP16455 207 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 NUDT1P36639 197 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 CTRLP40313 264 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 NPBWR2P48146 333 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 PRMT2P55345 433 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 XKR7Q5GH72 579 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 RAET1LQ5VY80 246 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 RALGPS2Q86X27 583 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 TMEM61Q8N0U2 210 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 Q8N7P7 452 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 CCDC54Q8NEL0 328 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 OR2G3Q8NGZ4 309 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 MCOLN3Q8TDD5 553 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 OR2M2Q96R28 347 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 TMEM59Q9BXS4 323 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 LRRK1Q38SD2 2015 aa2.52□□□□□ -2.01
SMCHD1-209ENST00000583441 PDS5BQ9NTI5 1447 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 WI2-2373I1.2A0A1W2PRP0 233 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 SMCO3A2RU48 225 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 NKX2-6A6NCS4 301 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 C9JVG2 144 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 PEX7O00628 323 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 CSF3P09919 207 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 GKN3PP0CG01 181 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF17P17021 662 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 CCNE1P24864 410 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 FOXN2P32314 431 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 ACLYP53396 1101 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 PDIA2Q13087 525 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 RFX4Q33E94 735 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 CARD17Q5XLA6 110 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 ACP7Q6ZNF0 438 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 MFSD6LQ8IWD5 586 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 B3GNT7Q8NFL0 401 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 NPBQ8NG41 125 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 OR4C5Q8NGB2 326 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 OR4F15Q8NGB8 312 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF578Q96N58 590 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 TSNARE1Q96NA8 513 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 SH3GL3Q99963 347 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 CENPKQ9BS16 269 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 OSBPL10Q9BXB5 764 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 PISDQ9UG56 409 aa2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 PACSIN2Q9UNF0 486 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 CSDC2Q9Y534 153 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-209ENST00000583441 IGLV3-22A0A075B6J6 115 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 TRAV39A0A0B4J263 110 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 XKRYO14609 159 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 ERLIN1O75477 346 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 EIF3GO75821 320 aaKnown RBP eCLIP2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF43P17038 809 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 RRM2P31350 389 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 SRSF5Q13243 272 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 TMEM255AQ5JRV8 349 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 FRMPD2BQ6IN97 320 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 CNIH2Q6PI25 160 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 CENPQQ7L2Z9 268 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 LHFPL3Q86UP9 236 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 BBS5Q8N3I7 341 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 ZADH2Q8N4Q0 377 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 OR7G2Q8NG99 324 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 RHEBL1Q8TAI7 183 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 PLPPR1Q8TBJ4 325 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 SDR42E1Q8WUS8 393 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 SLC38A4Q969I6 547 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 GPR61Q9BZJ8 451 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 NXF3Q9H4D5 531 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 ZNF226Q9NYT6 803 aa2.5□□□□□ -2.01
SMCHD1-209ENST00000583441 FRMPD3Q5JV73 1810 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms