RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ANK2Q01484 3957 aa18.14■□□□□ 0.49
VPS53-216ENST00000574029 M0R233 179 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 ITGA2P17301 1181 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 PIGFQ07326 219 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 ELFN2Q5R3F8 820 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 GCNT6Q5T4J0 391 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 REEP3Q6NUK4 255 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 ZNF813Q6ZN06 617 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 KRT73Q86Y46 540 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 TXNDC15Q96J42 360 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 MAGEB18Q96M61 343 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 ASPNQ9BXN1 380 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 DENND2DQ9H6A0 471 aaPredicted RBP18.13■□□□□ 0.49
VPS53-216ENST00000574029 MED29Q9NX70 200 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 MRPL39Q9NYK5 338 aaKnown RBP18.13■□□□□ 0.49
VPS53-216ENST00000574029 POFUT2Q9Y2G5 429 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 SPEF1Q9Y4P9 236 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 NOX1Q9Y5S8 564 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 GMEB1Q9Y692 573 aa18.13■□□□□ 0.49
VPS53-216ENST00000574029 A0A0B4J2E0 115 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 A0A1B0GX12 115 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 TGDSO95455 350 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 PCMT1P22061 227 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 AQP5P55064 265 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 CDK6Q00534 326 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 PMS2P3Q13401 168 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 CCNIQ14094 377 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 FXNQ16595 210 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 TRMT5Q32P41 509 aaKnown RBP18.12■□□□□ 0.49
VPS53-216ENST00000574029 EPGNQ6UW88 154 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 MEX3DQ86XN8 651 aaKnown RBP18.12■□□□□ 0.49
VPS53-216ENST00000574029 MOGAT1Q96PD6 335 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 TMEM27Q9HBJ8 222 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 SLCO1B3Q9NPD5 702 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 SELENONQ9NZV5 590 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 SLAMF8Q9P0V8 285 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 USH1CQ9Y6N9 552 aa18.12■□□□□ 0.49
VPS53-216ENST00000574029 B4DSR2 109 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 TPST2O60704 377 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 B4GALT1P15291 398 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 PTDSS1P48651 473 aaKnown RBP18.11■□□□□ 0.49
VPS53-216ENST00000574029 RGS8P57771 180 aaPredicted RBP18.11■□□□□ 0.49
VPS53-216ENST00000574029 NCALDP61601 193 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 RAB1AP62820 205 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 PUDPQ08623 228 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 CAMK2DQ13557 499 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 OR1Q1Q15612 314 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 PXKQ7Z7A4 578 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 SNX32Q86XE0 403 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 FUNDC1Q8IVP5 155 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 FOXB1Q99853 325 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 SYT3Q9BQG1 590 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 TMEM43Q9BTV4 400 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 ULBP2Q9BZM5 246 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 RACGAP1Q9H0H5 632 aa18.11■□□□□ 0.49
VPS53-216ENST00000574029 ZNF726A6NNF4 738 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 PLPP3O14495 311 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 UBL3O95164 117 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 HPXP02790 462 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 PPIBP23284 216 aaKnown RBP18.1■□□□□ 0.49
VPS53-216ENST00000574029 COL8A2P25067 703 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 ALDH3B1P43353 468 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 GIPRP48546 466 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 SEC24CP53992 1094 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 BLOC1S3Q6QNY0 202 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 DEF8Q6ZN54 512 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 RINLQ6ZS11 566 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 GLCCI1Q86VQ1 547 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 LRP11Q86VZ4 500 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 BHLHE22Q8NFJ8 381 aaPredicted RBP18.1■□□□□ 0.49
VPS53-216ENST00000574029 OR6N1Q8NGY5 312 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 CLDND2Q8NHS1 167 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 RNF217Q8TC41 542 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 RDH5Q92781 318 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 WFDC6Q9BQY6 131 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 TMEM38AQ9H6F2 299 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 SLC52A3Q9NQ40 469 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 VAPAQ9P0L0 249 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 METRNQ9UJH8 293 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 FBXL3Q9UKT7 428 aa18.1■□□□□ 0.49
VPS53-216ENST00000574029 TRBV5-3A0A0A0MS03 114 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 PRORSD1PA6NEY8 169 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 LRRN3E7EW58 273 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 RAB36O95755 333 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 TCN1P20061 433 aaPredicted RBP18.09■□□□□ 0.49
VPS53-216ENST00000574029 ACHEP22303 614 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 GPR6P46095 362 aaPredicted RBP18.09■□□□□ 0.49
VPS53-216ENST00000574029 CDH12P55289 794 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 STX1BP61266 288 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 RPS23P62266 143 aaKnown RBP18.09■□□□□ 0.49
VPS53-216ENST00000574029 GALK2Q01415 458 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 SCARB2Q14108 478 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 PAGE3Q5JUK9 113 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 SWT1Q5T5J6 900 aaKnown RBP18.09■□□□□ 0.49
VPS53-216ENST00000574029 REP15Q6BDI9 236 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 CARM1Q86X55 608 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 ZNF607Q96SK3 696 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 EVA1AQ9H8M9 152 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 MED4Q9NPJ6 270 aa18.09■□□□□ 0.49
VPS53-216ENST00000574029 MYEF2Q9P2K5 600 aaKnown RBP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms