RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ZNF563Q8TA94 476 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 ADIPOR1Q96A54 375 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 CCDC74AQ96AQ1 378 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 LCORQ96JN0 433 aaPredicted RBP20.67■□□□□ 0.9
VPS53-211ENST00000571805 ADOQ96SZ5 270 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 LAT2Q9GZY6 243 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 FKRPQ9H9S5 495 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 B3GNT2Q9NY97 397 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 U3KQ87 197 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 OR4C45A6NMZ5 311 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 TNFRSF10AO00220 468 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 ALOX5APP20292 161 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 RORAP35398 523 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 EEF1A1P5Q5VTE0 462 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 TTC9Q92623 222 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 MIB2Q96AX9 1013 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 DACT3Q96B18 629 aaPredicted RBP20.66■□□□□ 0.9
VPS53-211ENST00000571805 OR8D2Q9GZM6 311 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 SLITRK2Q9H156 845 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 WDR76Q9H967 626 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 C12orf10Q9HB07 376 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 LAMP5Q9UJQ1 280 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 ANKRD20A5PA0PJZ0 165 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 FRG2CA6NGY1 282 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 TGM6O95932 706 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 IGKV3-11P04433 115 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 CDK2P24941 298 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 P2RX1P51575 399 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 DMWDQ09019 674 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 TMEM69Q5SWH9 247 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 PRR22Q8IZ63 422 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 OR2G2Q8NGZ5 317 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 C1orf216Q8TAB5 229 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 LMX1AQ8TE12 382 aa20.66■□□□□ 0.9
VPS53-211ENST00000571805 TLCD2A6NGC4 264 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 ICOSLGO75144 302 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 RAF1P04049 648 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 PTHLHP12272 177 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 POU3F3P20264 500 aaPredicted RBP20.65■□□□□ 0.9
VPS53-211ENST00000571805 MNDAP41218 407 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 ART1P52961 327 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 AP3S2P59780 193 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 ZNF117Q03924 483 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 DPY19L4Q7Z388 723 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 DNAAF1Q8NEP3 725 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 OR6N2Q8NGY6 317 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 TSLPQ969D9 159 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 ELF4Q99607 663 aaPredicted RBP20.65■□□□□ 0.9
VPS53-211ENST00000571805 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.65■□□□□ 0.9
VPS53-211ENST00000571805 TRIOO75962 3097 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 TRBV5-7A0A0A0MS05 114 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 NME1P15531 152 aaKnown RBP20.65■□□□□ 0.9
VPS53-211ENST00000571805 RPS27P42677 84 aaKnown RBP20.65■□□□□ 0.9
VPS53-211ENST00000571805 P2RX3P56373 397 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 MRPS10P82664 201 aaKnown RBP20.65■□□□□ 0.9
VPS53-211ENST00000571805 LGALSLQ3ZCW2 172 aaPredicted RBP20.65■□□□□ 0.9
VPS53-211ENST00000571805 Q6ZTK2 550 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 ZNF680Q8NEM1 530 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 OR10AC1Q8NH08 325 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 ZNF721Q8TF20 911 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 KLHL15Q96M94 604 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 SORCS2Q96PQ0 1159 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 MNTQ99583 582 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 CHRNA10Q9GZZ6 450 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 OR10A4Q9H209 315 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 SCP2D1Q9UJQ7 156 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 IKZF2Q9UKS7 526 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 MMACHCQ9Y4U1 282 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 ETV7Q9Y603 341 aa20.65■□□□□ 0.9
VPS53-211ENST00000571805 TRAV8-7A0A075B6U6 113 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 IGKV3D-11A0A0A0MRZ8 115 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 G3V3Q6 166 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 PRAF2O60831 178 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 DDAH2O95865 285 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 GPANK1O95872 356 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 GLULP15104 373 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 CSRP1P21291 193 aaKnown RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 OR1D4P47884 311 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 VEGFCP49767 419 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 SELENOPP49908 381 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 CAMK2BQ13554 666 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 KCNAB1Q14722 419 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 OLFML2AQ68BL7 652 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 GPR139Q6DWJ6 353 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 C17orf82Q86X59 251 aaPredicted RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 GKN2Q86XP6 184 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 FAM174AQ8TBP5 190 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 ZNF436Q9C0F3 470 aaPredicted RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 SYT4Q9H2B2 425 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 C17orf51A8MQB3 221 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 H3BMH7 237 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 NOS1APO75052 506 aaPredicted RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 KHDRBS3O75525 346 aaKnown RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 RENP00797 406 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 BGLAPP02818 100 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 HIST1H2ABP04908 130 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 DNASE1P24855 282 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 PPM1FP49593 454 aaPredicted RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 EGR3Q06889 387 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms