RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 EXT1Q16394 746 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 SGCBQ16585 318 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 CDONQ4KMG0 1287 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 DCAF10Q5QP82 559 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 DDI2Q5TDH0 399 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 ARL9Q6T311 187 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 C16orf47Q6ZP98 133 aaPredicted RBP16.06■□□□□ 0.16
SNX1-208ENST00000559844 OR51L1Q8NGJ5 315 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 OR6K6Q8NGW6 343 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 OR6S1Q8NH40 331 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 ASB15Q8WXK1 588 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 TSPAN32Q96QS1 320 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 ALG12Q9BV10 488 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 RPRD1BQ9NQG5 326 aaKnown RBP16.06■□□□□ 0.16
SNX1-208ENST00000559844 ETAA1Q9NY74 926 aa16.06■□□□□ 0.16
SNX1-208ENST00000559844 PTPRQQ9UMZ3 2332 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 TPRP12270 2363 aaKnown RBP16.05■□□□□ 0.16
SNX1-208ENST00000559844 NPIPB7O75200 414 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 SERPINI2O75830 405 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 AHSA1O95433 338 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 CELA2AP08217 269 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 NAA10P41227 235 aaPredicted RBP16.05■□□□□ 0.16
SNX1-208ENST00000559844 C1orf140Q5VVS0 124 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 SSX6Q7RTT6 188 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 MS4A15Q8N5U1 240 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 EXD3Q8N9H8 876 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 OR2T4Q8NH00 348 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 OR5J2Q8NH18 312 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 ZPLD1Q8TCW7 415 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 SNX33Q8WV41 574 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 FER1L6-AS2Q96M78 137 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 DCLRE1CQ96SD1 692 aaKnown RBP16.05■□□□□ 0.16
SNX1-208ENST00000559844 PTDSS2Q9BVG9 487 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 CPNE5Q9HCH3 593 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 SDHAF3Q9NRP4 125 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 MYOTQ9UBF9 498 aa16.05■□□□□ 0.16
SNX1-208ENST00000559844 A0A087WV48 116 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 ARGFXA6NJG6 315 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 E9PI62 339 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 OR2T1O43869 369 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 SERPINA3P01011 423 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 CD1AP06126 327 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 MSX1P28360 303 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 PYCR1P32322 319 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 DLX5P56178 289 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 LINC01590Q5TEZ4 76 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 DMKNQ6E0U4 476 aaPredicted RBP16.04■□□□□ 0.16
SNX1-208ENST00000559844 LAX1Q8IWV1 398 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 GHDCQ8N2G8 530 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 SP140LQ9H930 580 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 LOC400499M0QZD8 3231 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 OGG1O15527 345 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 ZNF354AO60765 605 aaPredicted RBP16.04■□□□□ 0.16
SNX1-208ENST00000559844 APOBEC1P41238 236 aaKnown RBP16.04■□□□□ 0.16
SNX1-208ENST00000559844 TGM4P49221 684 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 TMPRSS3P57727 454 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 DEFA1P59665 94 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 DEFA3P59666 94 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 Q0VFX4 171 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 TP53I3Q53FA7 332 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 MESTQ5EB52 335 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 STEAP3Q658P3 488 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 MZT2AQ6P582 158 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 SLC22A16Q86VW1 577 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 EGFL6Q8IUX8 553 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 CLEC1AQ8NC01 280 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 M1APQ8TC57 530 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 SMAP2Q8WU79 429 aaPredicted RBP16.04■□□□□ 0.16
SNX1-208ENST00000559844 ZNRF4Q8WWF5 429 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 DEFB126Q9BYW3 111 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 INIPQ9NRY2 104 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 ST6GALNAC2Q9UJ37 374 aa16.04■□□□□ 0.16
SNX1-208ENST00000559844 ZNF346Q9UL40 294 aaKnown RBP16.04■□□□□ 0.16
SNX1-208ENST00000559844 LAMA5O15230 3695 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 ACACBO00763 2458 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 SELENOFO60613 162 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 TRIM3O75382 744 aaPredicted RBP16.03■□□□□ 0.16
SNX1-208ENST00000559844 ICAM2P13598 275 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 PSMD7P51665 324 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 RRADP55042 308 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 UCNP55089 124 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 PPP3R1P63098 170 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 SLC3A1Q07837 685 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 CHAF1BQ13112 559 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 DEFB109BQ30KR1 87 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 CCDC58Q4VC31 144 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 SLC16A9Q7RTY1 509 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 KDF1Q8NAX2 398 aaPredicted RBP16.03■□□□□ 0.16
SNX1-208ENST00000559844 FAM83FQ8NEG4 500 aaPredicted RBP16.03■□□□□ 0.16
SNX1-208ENST00000559844 ABHD4Q8TB40 342 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 SLC25A36Q96CQ1 311 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 SNX18Q96RF0 628 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 ABCB9Q9NP78 766 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 TAS2R5Q9NYW4 299 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 KLRF1Q9NZS2 232 aa16.03■□□□□ 0.16
SNX1-208ENST00000559844 XKRYO14609 159 aa16.02■□□□□ 0.16
SNX1-208ENST00000559844 OR6A2O95222 327 aa16.02■□□□□ 0.16
SNX1-208ENST00000559844 FBXO45P0C2W1 286 aa16.02■□□□□ 0.16
SNX1-208ENST00000559844 PRKCAP17252 672 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms