RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SMPD3Q9NY59 655 aaPredicted RBP4.64□□□□□ -1.67
LDLR-209ENST00000558528 USE1Q9NZ43 259 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 RPS6KB2Q9UBS0 482 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 CTSFQ9UBX1 484 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 TESQ9UGI8 421 aaKnown RBP4.64□□□□□ -1.67
LDLR-209ENST00000558528 TEKT2Q9UIF3 430 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 MGAT4BQ9UQ53 548 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 ZNF443Q9Y2A4 671 aaPredicted RBP4.64□□□□□ -1.67
LDLR-209ENST00000558528 SAMHD1Q9Y3Z3 626 aaKnown RBP4.64□□□□□ -1.67
LDLR-209ENST00000558528 V9GYQ6 96 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 NAV3Q8IVL0 2385 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 CELSR2Q9HCU4 2923 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 LRP4O75096 1905 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 ADGRG4Q8IZF6 3080 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 PTPRBP23467 1997 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 THADAQ6YHU6 1953 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 PDZD2O15018 2839 aa4.64□□□□□ -1.67
LDLR-209ENST00000558528 ABCA7Q8IZY2 2146 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 IGHV1-45A0A0A0MS14 117 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NSG1A0A0A6YYJ2 146 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 ZNF503-AS2A6NEH8 195 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 SERINC4A6NH21 518 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 M0R3G1 203 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 AP4M1O00189 453 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 FAAHO00519 579 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 DENRO43583 198 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 FCMRO60667 390 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 CCNB2O95067 398 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 OPN1SWP03999 348 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 ADH4P08319 380 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 LINGO3P0C6S8 592 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 ZNF26P17031 533 aaPredicted RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 ITIH1P19827 911 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 RPS4Y1P22090 263 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 DCTP40126 519 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 GPR143P51810 404 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NR0B1P51843 470 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 RGS8P57771 180 aaPredicted RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 TAS2R41P59536 307 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 GMFBP60983 142 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 ESRRGP62508 458 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 CSNK2BP67870 215 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 SPIBQ01892 262 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 PLCXD2Q0VAA5 305 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 SNTA1Q13424 505 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 IL18R1Q13478 541 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 DGCR6Q14129 220 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 TRAM2Q15035 370 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 EBPQ15125 230 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 MAPK11Q15759 364 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NPTX1Q15818 432 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NRF1Q16656 503 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 MICAQ29983 383 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 ANKDD1AQ495B1 522 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 SHEQ5VZ18 495 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 LPCAT4Q643R3 524 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 TCTN3Q6NUS6 607 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 ZNF613Q6PF04 617 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 FAM198BQ6UWH4 519 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 IZUMO2Q6UXV1 221 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 DGAT2L6Q6ZPD8 337 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 MDGA2Q7Z553 956 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 VTCN1Q7Z7D3 282 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 SLC43A2Q8N370 569 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 CBR4Q8N4T8 237 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 SLC5A8Q8N695 610 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 BCORP1Q8N888 145 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NHLRC2Q8NBF2 726 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NFAM1Q8NET5 270 aaPredicted RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 MAGEE2Q8TD90 523 aaPredicted RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 DNAJA4Q8WW22 397 aaPredicted RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 PIK3R3Q92569 461 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 OTULINQ96BN8 352 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NAF1Q96HR8 494 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 MCHR1Q99705 422 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 CIB1Q99828 191 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 PSD2Q9BQI7 771 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NUDT9Q9BW91 350 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 YTHDF1Q9BYJ9 559 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 PRRG3Q9BZD7 231 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 TBL1XR1Q9BZK7 514 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NDEL1Q9GZM8 345 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 WWTR1Q9GZV5 400 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 LAT2Q9GZY6 243 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 GABARAPL1Q9H0R8 117 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 NMNAT1Q9HAN9 279 aaPredicted RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 C12orf10Q9HB07 376 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 EXOSC3Q9NQT5 275 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 PDP1Q9P0J1 537 aaPredicted RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 EXTL2Q9UBQ6 330 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 ABCG2Q9UNQ0 655 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 POFUT2Q9Y2G5 429 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 KCNK7Q9Y2U2 307 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 C15orf41Q9Y2V0 281 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 YARS2Q9Y2Z4 477 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 KCNE3Q9Y6H6 103 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 HSPE1-MOB4S4R3N1 261 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 MTORP42345 2549 aa4.63□□□□□ -1.67
LDLR-209ENST00000558528 TLN1Q9Y490 2541 aaKnown RBP4.63□□□□□ -1.67
LDLR-209ENST00000558528 CRYBG3Q68DQ2 2970 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms