RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ROR2Q01974 943 aaKnown RBP15.39■□□□□ 0.05
SHMT2-225ENST00000556798 RUNX1T1Q06455 604 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 GABPB1Q06547 395 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-225ENST00000556798 STK11Q15831 433 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 ALKBH2Q6NS38 261 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 C20orf196Q8IYI0 205 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 ZNF295-AS1Q8N0V1 137 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 STEAP2Q8NFT2 490 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 OR6X1Q8NH79 312 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 FAM222BQ8WU58 562 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 ASB10Q8WXI3 467 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 LINC00470Q9BZP3 86 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 YY1AP1Q9H869 796 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 KCNN3Q9UGI6 736 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 IL20RAQ9UHF4 553 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 SIGLEC7Q9Y286 467 aa15.39■□□□□ 0.05
SHMT2-225ENST00000556798 CIB4A0PJX0 185 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 OR6C65A6NJZ3 312 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 THBDP07204 575 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 EPXP11678 715 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 HOXB6P17509 224 aaKnown RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 FPR3P25089 353 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 MPGP29372 298 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 RPL4P36578 427 aaKnown RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 IFNGR2P38484 337 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 CSNK1A1P48729 337 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 DAP3P51398 398 aaKnown RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 FXYD6P3P58550 94 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 KPNB1Q14974 876 aaKnown RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 ANKDD1AQ495B1 522 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 ZNF770Q6IQ21 691 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 HMBOX1Q6NT76 420 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 C1orf94Q6P1W5 598 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 THSD4Q6ZMP0 1018 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 YTHDF3Q7Z739 585 aaKnown RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 TMEM179BQ7Z7N9 219 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 AQP11Q8NBQ7 271 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 OR6N1Q8NGY5 312 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 FANK1Q8TC84 345 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 GNPDA2Q8TDQ7 276 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 ZNF837Q96EG3 531 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 ADAD1Q96M93 576 aaKnown RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 DACH2Q96NX9 599 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 TSPAN32Q96QS1 320 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 KATNB1Q9BVA0 655 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 HDHD5Q9BXW7 423 aa15.38■□□□□ 0.05
SHMT2-225ENST00000556798 POLDIP3Q9BY77 421 aaKnown RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 HRNRQ86YZ3 2850 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-225ENST00000556798 A0A1W2PR80 420 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 PTP4A3O75365 173 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 E2F6O75461 281 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 PGA4P0DJD7 388 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 PGA3P0DJD8 388 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 PRF1P14222 555 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 GSSP48637 474 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 PRPS1P60891 318 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 ERVK-25P63136 954 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 GABRA6Q16445 453 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 MICAQ29983 383 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 CEACAM16Q2WEN9 425 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 ARMC4Q5T2S8 1044 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 ABHD12BQ7Z5M8 362 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-225ENST00000556798 WFDC8Q8IUA0 241 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 OR10G2Q8NGC3 310 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 ZNF566Q969W8 418 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 SLC25A44Q96H78 314 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-225ENST00000556798 OR10A4Q9H209 315 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 TXNIPQ9H3M7 391 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 SLC24A3Q9HC58 644 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 CRLF2Q9HC73 371 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 GPR35Q9HC97 309 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 ADAM18Q9Y3Q7 739 aa15.37■□□□□ 0.05
SHMT2-225ENST00000556798 TRMUO75648 421 aaKnown RBP15.36■□□□□ 0.05
SHMT2-225ENST00000556798 SEC14L2O76054 403 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 NDUFB2O95178 105 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 GASTP01350 101 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 IGHG1P01857 330 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 IGHMP01871 453 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 PPP3CBP16298 524 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 CLRN1P58418 232 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 ACTR3P61158 418 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 RPL27P61353 136 aaKnown RBP15.36■□□□□ 0.05
SHMT2-225ENST00000556798 MYBPC1Q00872 1141 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 TSPAN31Q12999 210 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 TAB1Q15750 504 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 HS3ST5Q8IZT8 346 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 LINC00471Q8N535 108 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 SYT14Q8NB59 555 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 NOXO1Q8NFA2 376 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 HDAC2Q92769 488 aaKnown RBP15.36■□□□□ 0.05
SHMT2-225ENST00000556798 TMEM54Q969K7 222 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 GTPBP3Q969Y2 492 aaKnown RBP15.36■□□□□ 0.05
SHMT2-225ENST00000556798 LRR1Q96L50 414 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 RAB3IPQ96QF0 476 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-225ENST00000556798 ULBP2Q9BZM5 246 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 OR52D1Q9H346 318 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 DNAJB9Q9UBS3 223 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 ZNF346Q9UL40 294 aaKnown RBP15.36■□□□□ 0.05
SHMT2-225ENST00000556798 AP4S1Q9Y587 144 aa15.36■□□□□ 0.05
SHMT2-225ENST00000556798 ABCA4P78363 2273 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms