RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 AHCYP23526 432 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 FABP6P51161 128 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 NAAAQ02083 359 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 LRRC23Q53EV4 343 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 PHYHD1Q5SRE7 291 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 CLEC9AQ6UXN8 241 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC35D2Q76EJ3 337 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 TREML1Q86YW5 311 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 NUP37Q8NFH4 326 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 IL17RDQ8NFM7 739 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 OR4F15Q8NGB8 312 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 TMEM239Q8WW34 195 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 TMEM54Q969K7 222 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC25A44Q96H78 314 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 POM121Q96HA1 1249 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 EMC6Q9BV81 110 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 ULBP2Q9BZM5 246 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 B3GNT2Q9NY97 397 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 FBXO9Q9UK97 447 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 MOKQ9UQ07 419 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 ATP23Q9Y6H3 246 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 M0R3G1 203 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 SNX3O60493 162 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 HIST1H2ABP04908 130 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 HOXB4P17483 251 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 TNFRSF1BP20333 461 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 PTNP21246 168 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 CSNK1A1P48729 337 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 SLC7A2P52569 658 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 UGT2B15P54855 530 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 DSCR9P59020 149 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 LIPEQ05469 1076 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 CHRNB3Q05901 458 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 TNK1Q13470 666 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 PIN1Q13526 163 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 SWI5Q1ZZU3 235 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 NRN1LQ496H8 165 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 DEF8Q6ZN54 512 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 HIST3H2AQ7L7L0 130 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 HDDC2Q7Z4H3 204 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 NANOGNBQ7Z5D8 188 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 NKAIN4Q8IVV8 208 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 WDFY1Q8IWB7 410 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 OFCC1Q8IZS5 231 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 LRRC17Q8N6Y2 441 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 TMEM255BQ8WV15 326 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 HIST1H2ACQ93077 130 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 SMR3AQ99954 134 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 KCNS3Q9BQ31 491 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 CACNG6Q9BXT2 260 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 NSRP1Q9H0G5 558 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF442Q9H7R0 627 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 FBXL3Q9UKT7 428 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 A4GNTQ9UNA3 340 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 ALPK2Q86TB3 2170 aa13.95□□□□□ -0.18
CCDC88C-209ENST00000554872 TLN2Q9Y4G6 2542 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF503-AS2A6NEH8 195 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 KPNA4O00629 521 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 RNF13O43567 381 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 OR7A10O76100 309 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 PGA4P0DJD7 388 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 PGA3P0DJD8 388 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 IFNA8P32881 189 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 OR1E2P47887 323 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF133P52736 654 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 BIDP55957 195 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 ST3GAL3Q11203 375 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 CAMK2DQ13557 499 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 EFNB3Q15768 340 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 HIST3H3Q16695 136 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 CBLL1Q75N03 491 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 PIWIL3Q7Z3Z3 882 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 OR6N1Q8NGY5 312 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 GEMIN6Q8WXD5 167 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 NANOS1Q8WY41 292 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF566Q969W8 418 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 SGTBQ96EQ0 304 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF75AQ96N20 296 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 FOXB1Q99853 325 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 ELAC2Q9BQ52 826 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 CA10Q9NS85 328 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 GLTPQ9NZD2 209 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 STX18Q9P2W9 335 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 MED31Q9Y3C7 131 aa13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 HEATR1Q9H583 2144 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-209ENST00000554872 C11orf98E9PRG8 122 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 CXCR6O00574 342 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 MGRN1O60291 552 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 LY6G6DO95868 133 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 IFNW1P05000 195 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 DRD4P21917 467 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 LSP1P33241 339 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 ACVR1BP36896 505 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 GSK3BP49841 420 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 NUDT2P50583 147 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 DAP3P51398 398 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 SEC24CP53992 1094 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 RPL18Q07020 188 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 MST1LQ2TV78 715 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 ANKDD1AQ495B1 522 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms