RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZFHX4Q86UP3 3567 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TRBV5-3A0A0A0MS03 114 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TRDV1A0A1B0GX56 115 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 POM121BA6NF01 834 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 WRBO00258 174 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CHP2O43745 196 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 NTN1O95631 604 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 C1SP09871 688 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 MPC1LP0DKB6 136 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CFL1P23528 166 aaKnown RBP5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TEAD1P28347 426 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 AKT2P31751 481 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CD79BP40259 229 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TFF2Q03403 129 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 FZD5Q13467 585 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PDZD11Q5EBL8 140 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 EIF5AL1Q6IS14 154 aaKnown RBP5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TSSK4Q6SA08 328 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TTLL10Q6ZVT0 673 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 RHOUQ7L0Q8 258 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 RASGEF1AQ8N9B8 481 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 HS6ST2Q96MM7 605 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TRIB3Q96RU7 358 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 VRK1Q99986 396 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PTDSS2Q9BVG9 487 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 GABARAPL3Q9BY60 117 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PLA2G12AQ9BZM1 189 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ACKR4Q9NPB9 350 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 NOX4Q9NPH5 578 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 HINT3Q9NQE9 182 aaKnown RBP5.03□□□□□ -1.6
LIMA1-203ENST00000547825 POLE3Q9NRF9 147 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 KCMF1Q9P0J7 381 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CLEC4EQ9ULY5 219 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LRP4O75096 1905 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ICE1Q9Y2F5 2266 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 A0A0A6YYH2 397 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 A6NJ64 397 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 HEPACAM2A8MVW5 462 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 H7C1C5 153 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PRAMEF4O60810 478 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CLUP10909 449 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 RAB3AP20336 220 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LCN6P62502 163 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 IL13RA1P78552 427 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ACVR1Q04771 509 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PMS2P11Q13670 270 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PEA15Q15121 130 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LTB4RQ15722 352 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 C1orf189Q5VU69 101 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 OR4C11Q6IEV9 310 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 H3F3CQ6NXT2 135 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LEG1Q6P5S2 330 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM205Q6UW68 189 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 VITQ6UXI7 678 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TCTE3Q8IZS6 198 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 RDH10Q8IZV5 341 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 OR8D4Q8NGM9 314 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 SLC22A8Q8TCC7 542 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM239Q8WW34 195 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ACOT11Q8WXI4 607 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CDS1Q92903 461 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 BPIFA2Q96DR5 249 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 RNF170Q96K19 258 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PRRC1Q96M27 445 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 DERL3Q96Q80 235 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CNN2Q99439 309 aaKnown RBP5.03□□□□□ -1.6
LIMA1-203ENST00000547825 PITX2Q99697 317 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ULBP3Q9BZM4 244 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 GRHPRQ9UBQ7 328 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 LHX3Q9UBR4 397 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 CYB5R1Q9UHQ9 305 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 SLC6A5Q9Y345 797 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 ASB4Q9Y574 426 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 V9GY05 133 aa5.03□□□□□ -1.6
LIMA1-203ENST00000547825 WASH3PC4AMC7 463 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 LEFTY2O00292 366 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 EMC8O43402 210 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 LDB3O75112 727 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RENP00797 406 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 HLA-AP01891 365 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 DCTDP32321 178 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CTNNB1P35222 781 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OPRD1P41143 372 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR2B8PP59922 312 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RAB2AP61019 212 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 UBE2IP63279 158 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CLINT1Q14677 625 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CD276Q5ZPR3 534 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM81Q6P7N7 255 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 METAP1DQ6UB28 335 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TMUB2Q71RG4 321 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 DPPA4Q7L190 304 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 MEPCEQ7L2J0 689 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 L3MBTL4Q8NA19 623 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PXT1Q8NFP0 134 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR7G2Q8NG99 324 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR4K14Q8NGD5 310 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR51D1Q8NGF3 324 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ANGPTL6Q8NI99 470 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 METTL21AQ8WXB1 218 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms