RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SRSF1Q07955 248 aaKnown RBP eCLIP15.16■□□□□ 0.021e-6■■■■□ 21.1
LIG1-204ENST00000542460 SLC36A3Q495N2 470 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 ARMC4Q5T2S8 1044 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 PARP8Q8N3A8 854 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 ZNF610Q8N9Z0 462 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 OR2M2Q96R28 347 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 IFT27Q9BW83 186 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 OPN3Q9H1Y3 402 aaPredicted RBP15.16■□□□□ 0.02
LIG1-204ENST00000542460 JKAMPQ9P055 326 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 GRHPRQ9UBQ7 328 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 ZNF346Q9UL40 294 aaKnown RBP15.16■□□□□ 0.02
LIG1-204ENST00000542460 CLEC18AA5D8T8 446 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 A8MXE2 369 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 H3BN98 237 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 MGRN1O60291 552 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 SOX14O95416 240 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 CNOT4O95628 575 aaKnown RBP15.15■□□□□ 0.02
LIG1-204ENST00000542460 APEHP13798 732 aaKnown RBP15.15■□□□□ 0.02
LIG1-204ENST00000542460 RPS6KA3P51812 740 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 TOP3AQ13472 1001 aaPredicted RBP15.15■□□□□ 0.02
LIG1-204ENST00000542460 MELKQ14680 651 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 FAM205BPQ63HN1 556 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 GPR139Q6DWJ6 353 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 CLEC18BQ6UXF7 455 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 ZBTB49Q6ZSB9 765 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 BEND4Q6ZU67 534 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.15■□□□□ 0.02
LIG1-204ENST00000542460 LUZP2Q86TE4 346 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 TMEM123Q8N131 208 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 CBR4Q8N4T8 237 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 POMGNT2Q8NAT1 580 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 CLEC18CQ8NCF0 446 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 ASB10Q8WXI3 467 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 SLC25A44Q96H78 314 aaPredicted RBP15.15■□□□□ 0.02
LIG1-204ENST00000542460 TSPAN32Q96QS1 320 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 PLA2G12AQ9BZM1 189 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 SLCO5A1Q9H2Y9 848 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 RNPEPL1Q9HAU8 725 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 KCNJ16Q9NPI9 418 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 TBC1D23Q9NUY8 699 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 ENOPH1Q9UHY7 261 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 ADAM18Q9Y3Q7 739 aa15.15■□□□□ 0.02
LIG1-204ENST00000542460 EI24O14681 340 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 ARPC3O15145 178 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 IDH3BO43837 385 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 CLDN14O95500 239 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 ALPLP05186 524 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 IGFBP1P08833 259 aaPredicted RBP15.14■□□□□ 0.01
LIG1-204ENST00000542460 IGFBP5P24593 272 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 EDNRAP25101 427 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 ACVR1BP36896 505 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 ALDH3A2P51648 485 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 SLC34A1Q06495 639 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 RIPK1Q13546 671 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 CAMK2DQ13557 499 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 DAG1Q14118 895 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 TRIP10Q15642 601 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 CLEC12AQ5QGZ9 265 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 FBXW9Q5XUX1 488 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 FAM122BQ7Z309 247 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 UBE2J2Q8N2K1 259 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 ARIH2OSQ8N7S6 290 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 OR8D4Q8NGM9 314 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 TEX47Q8TBZ9 253 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 MAGEE2Q8TD90 523 aaPredicted RBP15.14■□□□□ 0.01
LIG1-204ENST00000542460 SSC4DQ8WTU2 575 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 ZNF566Q969W8 418 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 LRR1Q96L50 414 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 ERMAPQ96PL5 475 aaPredicted RBP15.14■□□□□ 0.01
LIG1-204ENST00000542460 TSSK6Q9BXA6 273 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 USE1Q9NZ43 259 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 TMEFF2Q9UIK5 374 aaPredicted RBP15.14■□□□□ 0.01
LIG1-204ENST00000542460 IER3IP1Q9Y5U9 82 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 HECTD1Q9ULT8 2610 aa15.14■□□□□ 0.01
LIG1-204ENST00000542460 A6NIZ1 184 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 FAM90A27PA6NNH2 459 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 CENPBD1B2RD01 187 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 SOCS2O14508 198 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 IMPA2O14732 288 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 PPP1R3DO95685 299 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 TXNDC12O95881 172 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 IGHV3-9P01782 118 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 IGHG1P01857 330 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 ACADSP16219 412 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 POU1F1P28069 291 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 NOS3P29474 1203 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 SDHAP31040 664 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 ASCL1P50553 236 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 RAP1BP61224 184 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 ESRRGP62508 458 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 RAP1AP62834 184 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 CDSNQ15517 529 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 TSPO2Q5TGU0 170 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 CARD17Q5XLA6 110 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 ZNF474Q6S9Z5 364 aaPredicted RBP15.13■□□□□ 0.01
LIG1-204ENST00000542460 Q6ZT83 130 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 WDFY1Q8IWB7 410 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 OR2T33Q8NG76 320 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 ZNF519Q8TB69 540 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 Q96M85 177 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms