RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 YIF1BQ5BJH7 314 aa12.45□□□□□ -0.42
RTN3-210ENST00000540798 C16orf47Q6ZP98 133 aaPredicted RBP12.45□□□□□ -0.42
RTN3-210ENST00000540798 OR4M1Q8NGD0 313 aa12.45□□□□□ -0.42
RTN3-210ENST00000540798 ST8SIA1Q92185 356 aa12.45□□□□□ -0.42
RTN3-210ENST00000540798 EDAQ92838 391 aa12.45□□□□□ -0.42
RTN3-210ENST00000540798 OR14A2Q96R54 314 aa12.45□□□□□ -0.42
RTN3-210ENST00000540798 PDCD1LG2Q9BQ51 273 aa12.45□□□□□ -0.42
RTN3-210ENST00000540798 VSX1Q9NZR4 365 aaPredicted RBP12.45□□□□□ -0.42
RTN3-210ENST00000540798 ZNF281Q9Y2X9 895 aa12.45□□□□□ -0.42
RTN3-210ENST00000540798 H7C1C5 153 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 PIN1P1O15428 100 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 PDGFBP01127 241 aaPredicted RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 FBXW4P57775 412 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 LCN6P62502 163 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 DUSP18Q8NEJ0 188 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 TRMT10AQ8TBZ6 339 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 SRA1Q9HD15 236 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 ABRACLQ9P1F3 81 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 SPEGQ15772 3267 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 A0A0G2JMP0 313 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 A0A0X1KG70 313 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 FAM25AB3EWG3 89 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 FAM25CB3EWG5 89 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 FAM25GB3EWG6 89 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 PLPP3O14495 311 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 FGF5P12034 268 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 PRKCAP17252 672 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 EMP2P54851 167 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 RPL27P61353 136 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 TRIQKQ629K1 86 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 LCN10Q6JVE6 187 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 ZNF544Q6NX49 715 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 MRPL14Q6P1L8 145 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 PAPD4Q6PIY7 484 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 LYPD8Q6UX82 237 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 IL20RBQ6UXL0 311 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 OR4M2Q8NGB6 313 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 GAREM1Q9H706 876 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 WDR76Q9H967 626 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 MRPL39Q9NYK5 338 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 HSPB2A8KAH6 182 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 FZD7O75084 574 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 AKR7A3O95154 331 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 TACSTD2P09758 323 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 ATF1P18846 271 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 ALOX5APP20292 161 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 GRPRP30550 384 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 EGR3Q06889 387 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 C17orf67Q0P5P2 114 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 STK11Q15831 433 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 HSPB2Q16082 182 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 POMZP3Q6PJE2 187 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 CPEB2Q7Z5Q1 589 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 PPP1R3BQ86XI6 285 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 EID2Q8N6I1 236 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 SAMD12Q8N8I0 201 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 METTL21AQ8WXB1 218 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 PIGKQ92643 395 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 GFI1Q99684 422 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 SYT4Q9H2B2 425 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 TXNIPQ9H3M7 391 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 RBFOX1Q9NWB1 397 aaKnown RBP12.44□□□□□ -0.42
RTN3-210ENST00000540798 B3GALT1Q9Y5Z6 326 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 FKBP7Q9Y680 259 aa12.44□□□□□ -0.42
RTN3-210ENST00000540798 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 ZNF879B4DU55 563 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 FLRT2O43155 660 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TMEM127O75204 238 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 ZFPL1O95159 310 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TRAPPC2P0DI81 140 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TRAPPC2BP0DI82 140 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 PSKH1P11801 424 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 MAP2K3P46734 347 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 MADCAM1Q13477 382 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 SF3A2Q15428 464 aaKnown RBP12.43□□□□□ -0.42
RTN3-210ENST00000540798 ACKR1Q16570 336 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 PM20D2Q8IYS1 436 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TMEM234Q8WY98 164 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TTC9Q92623 222 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TRIM63Q969Q1 353 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 KLHL15Q96M94 604 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 MMP28Q9H239 520 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 APMAPQ9HDC9 416 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 ANKRD10Q9NXR5 420 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 IGLV3-32A0A0A0MS00 114 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TRBV11-1A0A0K0K1C0 115 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 MEIOCA2RUB1 952 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 PRSS37A4D1T9 235 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 TFPIP10646 304 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 HSD17B12Q53GQ0 312 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 C19orf18Q8NEA5 215 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 IFI44Q8TCB0 444 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 ZC3H10Q96K80 434 aaKnown RBP12.43□□□□□ -0.42
RTN3-210ENST00000540798 ADAD1Q96M93 576 aaKnown RBP12.43□□□□□ -0.42
RTN3-210ENST00000540798 CMTM3Q96MX0 182 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 DERL3Q96Q80 235 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 C12orf4Q9NQ89 552 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 OCIAD1Q9NX40 245 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 SDK1Q7Z5N4 2213 aa12.43□□□□□ -0.42
RTN3-210ENST00000540798 COL27A1Q8IZC6 1860 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms