RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 EXO5Q9H790 373 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 ALKBH4Q9NXW9 302 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 RAB26Q9ULW5 256 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 NPIPA1Q9UND3 350 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 BAIAP2Q9UQB8 552 aa6.61□□□□□ -1.35
CD44-228ENST00000528455 LRRK2Q5S007 2527 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 A0A1B0GTH9 108 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NPIPB13A6NJU9 1138 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NPIPB4C9JG80 1138 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 LRRN3E7EW58 273 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 H3BN98 237 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 KPNA4O00629 521 aaPredicted RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 IMPA2O14732 288 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 ARPC3O15145 178 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 DENRO43583 198 aaKnown RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 AHCYL1O43865 530 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 PIP5K1CO60331 668 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NDUFB2O95178 105 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 OR6A2O95222 327 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 SNAP29O95721 258 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 OPN1LWP04000 364 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 HMGN1P05114 100 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 ENPP1P22413 925 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 TCEA1P23193 301 aaKnown RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 SHC1P29353 583 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 GRPRP30550 384 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 SLC6A6P31641 620 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 UQCRC1P31930 480 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 PTGS2P35354 604 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 PTGER4P35408 488 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 POLR2IP36954 125 aaKnown RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 GPR4P46093 362 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 SMSP52788 366 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 CLDN20P56880 219 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 RPS4XP62701 263 aaKnown RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 ADARB1P78563 741 aaKnown RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 EFNB1P98172 346 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 IL18R1Q13478 541 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 GINS1Q14691 196 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 PDK3Q15120 406 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 TESK1Q15569 626 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 OR7A5Q15622 319 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 ZIK1Q3SY52 487 aaPredicted RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 SLC36A3Q495N2 470 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 GXYLT1Q4G148 440 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 EMC4Q5J8M3 183 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 WLSQ5T9L3 541 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NHLRC1Q6VVB1 395 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 LNX2Q8N448 690 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 FAM26EQ8N5C1 309 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 OR10D3Q8NH80 312 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 SAMD8Q96LT4 415 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 OXGR1Q96P68 337 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 ZNF184Q99676 751 aaPredicted RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 SLX1AQ9BQ83 275 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 TEX12Q9BXU0 123 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NDEL1Q9GZM8 345 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 ENKD1Q9H0I2 346 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 OR52D1Q9H346 318 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 TOR3AQ9H497 397 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 RNF122Q9H9V4 155 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 CALHM2Q9HA72 323 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 CHST11Q9NPF2 352 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NRIP3Q9NQ35 241 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 LUZP4Q9P127 313 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 GPR160Q9UJ42 338 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NDRG4Q9ULP0 352 aaKnown RBP6.6□□□□□ -1.35
CD44-228ENST00000528455 RASD1Q9Y272 281 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 NOX1Q9Y5S8 564 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 CDH10Q9Y6N8 788 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 HSPE1-MOB4S4R3N1 261 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 KIAA1549Q9HCM3 1950 aa6.6□□□□□ -1.35
CD44-228ENST00000528455 MED12Q93074 2177 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 AQP7P3A6NL99 342 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ZAR1LA6NP61 321 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 BHLHE40O14503 412 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 TNFSF11O14788 317 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 CYTIPO60759 359 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 MITFO75030 526 aaPredicted RBP6.59□□□□□ -1.35
CD44-228ENST00000528455 WISP2O76076 250 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 AKR7A3O95154 331 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 SYNGR4O95473 234 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 TXNDC12O95881 172 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 CD14P08571 375 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ADORA3P0DMS8 318 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 GABRA1P14867 456 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 GNLYP22749 145 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 GTF2E2P29084 291 aaKnown RBP6.59□□□□□ -1.35
CD44-228ENST00000528455 AQP2P41181 271 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 P2RY4P51582 365 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 FXYD6P3P58550 94 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 IL1RL1Q01638 556 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 MVKQ03426 396 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 PUDPQ08623 228 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 KEAP1Q14145 624 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 KCNMB1Q16558 191 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ALG10Q5BKT4 473 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 FAM209AQ5JX71 171 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 SLC25A30Q5SVS4 291 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ZNF362Q5T0B9 420 aaPredicted RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms