RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 OR6N2Q8NGY6 317 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 GPR119Q8TDV5 335 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 RNF166Q96A37 237 aaPredicted RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 CLDN23Q96B33 292 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 S100A16Q96FQ6 103 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 ZFP3Q96NJ6 502 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 TSSK2Q96PF2 358 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 FYTTD1Q96QD9 318 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 GTPBP2Q9BX10 602 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 SLC7A5P2Q9GIP4 190 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 NRSN2Q9GZP1 204 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 TAS2R10Q9NYW0 307 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 IKZF2Q9UKS7 526 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 TP53BP1Q12888 1972 aaPredicted RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 RANBP2P49792 3224 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 IGLV3-12A0A075B6K2 115 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 NAP1L6A6NFF2 107 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 ACOD1A6NK06 481 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 FAM47E-STBD1D6RA91 191 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 RPP14O95059 124 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 AHSA1O95433 338 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 ATXN8OSP0DMR3 200 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 BCKDHBP21953 392 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 DPP4P27487 766 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 GRPRP30550 384 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 BTCP35070 178 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 MNDAP41218 407 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 GZMKP49863 264 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 FAPQ12884 760 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 MFSD13AQ14CX5 517 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 C1orf189Q5VU69 101 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 C1orf140Q5VVS0 124 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 RHBDD2Q6NTF9 364 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 TMEM71Q6P5X7 295 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 SYT9Q86SS6 491 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 SIAH3Q8IW03 269 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 CMTM4Q8IZR5 234 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 OR4D9Q8NGE8 314 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 OR2G2Q8NGZ5 317 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 GRPEL2Q8TAA5 225 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 ZFAND1Q8TCF1 268 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 GPR148Q8TDV2 347 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 ST8SIA1Q92185 356 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 RGP1Q92546 391 aaPredicted RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 NSMAFQ92636 917 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 ZNF524Q96C55 264 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 OR2M2Q96R28 347 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 GON7Q9BXV9 100 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 RTN4RQ9BZR6 473 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 SEMA4CQ9C0C4 833 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 TXNIPQ9H3M7 391 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 PAQR5Q9NXK6 330 aaPredicted RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 STMN3Q9NZ72 180 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 VSX1Q9NZR4 365 aaPredicted RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 EMC3Q9P0I2 261 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 FRRS1LQ9P0K9 344 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 MRPS7Q9Y2R9 242 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 KLHDC2Q9Y2U9 406 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 MPDZO75970 2070 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 A0A1B0GVC2 190 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 PRSS37A4D1T9 235 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 CDC14CA4D256 554 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 A6NIN4 97 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 OR4C45A6NMZ5 311 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 PRR32B1ATL7 298 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 IDSB3KWA1 339 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 GABARAPH6UMI1 98 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 ZNF254O75437 659 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 LDOC1O95751 146 aaPredicted RBP13.44□□□□□ -0.26
NUP54-217ENST00000514987 TCRBP04435 133 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 ANKRD34CP0C6C1 535 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 GIMD1P0DJR0 217 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 CXCL12P48061 93 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 CCR9P51686 369 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 EFNA3P52797 238 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 RNF4P78317 190 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 DGCR2P98153 550 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 SNTB2Q13425 540 aaKnown RBP13.44□□□□□ -0.26
NUP54-217ENST00000514987 TNK1Q13470 666 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 PRAMEF17Q5VTA0 474 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 FAM199XQ6PEV8 388 aaPredicted RBP13.44□□□□□ -0.26
NUP54-217ENST00000514987 STAC2Q6ZMT1 411 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 ADGRG3Q86Y34 549 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 ZNF433Q8N7K0 673 aaPredicted RBP13.44□□□□□ -0.26
NUP54-217ENST00000514987 ZNF676Q8N7Q3 588 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 DTX3Q8N9I9 347 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 OTOSQ8NHW6 89 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 ZNF519Q8TB69 540 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 THEM6Q8WUY1 208 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 CCDC74AQ96AQ1 378 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 SCMH1Q96GD3 660 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 TMEM246Q9BRR3 403 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 PTDSS2Q9BVG9 487 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 DUSP23Q9BVJ7 150 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 CACNG6Q9BXT2 260 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 MED28Q9H204 178 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 SYT4Q9H2B2 425 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 CCDC86Q9H6F5 360 aaKnown RBP13.44□□□□□ -0.26
NUP54-217ENST00000514987 MCUBQ9NWR8 336 aa13.44□□□□□ -0.26
NUP54-217ENST00000514987 CLEC4AQ9UMR7 237 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms