RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SARAFQ96BY9 339 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 MEPEQ9NQ76 525 aaPredicted RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 ERVK13-1Q9NX77 482 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 LOC101059948A0A1B0GTJ6 334 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 FAM183AA6NL82 134 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 PLPP3O14495 311 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ZNF254O75437 659 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 GABARAPO95166 117 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ACTL6AO96019 429 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 IGFBP1P08833 259 aaPredicted RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 UGT2B10P36537 528 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 SNRPNP63162 240 aaKnown RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 TOMM34Q15785 309 aaPredicted RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 LIPKQ5VXJ0 399 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 LCN10Q6JVE6 187 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ZNF517Q6ZMY9 492 aaPredicted RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 CCDC103Q8IW40 242 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 APH1BQ8WW43 257 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 RASD2Q96D21 266 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 TMEM131Q92545 1883 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ZDBF2Q9HCK1 2354 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 LIPT2A6NK58 231 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 CDC42EP2O14613 210 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 CLPXO76031 633 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 CRYABP02511 175 aaKnown RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 CLDN17P56750 224 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 EGR3Q06889 387 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 MYBPHQ13203 477 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 EIF2B1Q14232 305 aaKnown RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 ZNF404Q494X3 552 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 AADACL4Q5VUY2 407 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 AAED1Q7RTV5 226 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 OR4F15Q8NGB8 312 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 OR8D4Q8NGM9 314 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ULBP2Q9BZM5 246 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 OR11A1Q9GZK7 315 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 RNF32Q9H0A6 362 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 RNF121Q9H920 327 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 PARD6AQ9NPB6 346 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 CENPMQ9NSP4 180 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 LOC102725191A0A1B0GVB3 256 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 A0A1B0GVI7 797 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 G3V3Y1 287 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 GATBO75879 557 aaKnown RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 AKR7A3O95154 331 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ASAH2BP0C7U1 165 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 CCL3P10147 92 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ZNF182P17025 639 aaPredicted RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 GNALP38405 381 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 PLP2Q04941 152 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 CDC20Q12834 499 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 TMED9Q9BVK6 235 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 FKBP14Q9NWM8 211 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 HTTP42858 3142 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 TRBV2A0A0J9YWF9 115 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 CLDN25C9JDP6 229 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 H3BMQ9 156 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 OIP5O43482 229 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 SULT1C4O75897 302 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 ITGB2P05107 769 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 IFNGR1P15260 489 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 MEOX1P50221 254 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 RBPJQ06330 500 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 SLC3A1Q07837 685 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 NFATC3Q12968 1075 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 MOGQ16653 247 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 LRRN1Q6UXK5 716 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 TIPARPQ7Z3E1 657 aaKnown RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 YRDCQ86U90 279 aaKnown RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 GLB1L2Q8IW92 636 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 SPTSSAQ969W0 71 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 JAM3Q9BX67 310 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 PLEKHA1Q9HB21 404 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 PAK1IP1Q9NWT1 392 aaPredicted RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 CHST2Q9Y4C5 530 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 MDC1Q14676 2089 aaKnown RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 CACNA1EQ15878 2313 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 FTCDNL1E5RQL4 147 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 GDF9O60383 454 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 MRPL33O75394 65 aaKnown RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 PTHP01270 115 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 CASP6P55212 293 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 SCRN3Q0VDG4 424 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 TCF15Q12870 199 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 SGCAQ16586 387 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 CARD17Q5XLA6 110 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 C16orf47Q6ZP98 133 aaPredicted RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 CCDC54Q8NEL0 328 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 NOXO1Q8NFA2 376 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 S100A13Q99584 98 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 SYT4Q9H2B2 425 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 ANKRD10Q9NXR5 420 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 AASSQ9UDR5 926 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 NUP214P35658 2090 aaPredicted RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 TRIM64A6NGJ6 449 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 ANXA2P2A6NMY6 339 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 KLK10O43240 276 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 TMEM127O75204 238 aa7.55□□□□□ -1.2
USP54-215ENST00000497106 ANXA2P07355 339 aaKnown RBP7.55□□□□□ -1.2
USP54-215ENST00000497106 ZNF20P17024 532 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms