RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZFAND5O76080 213 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 ZFPL1O95159 310 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 CER1O95813 267 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 IGHMP01871 453 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 NPR2P20594 1047 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 IL11RAQ14626 422 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 HSD17B12Q53GQ0 312 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 BICRALQ6AI39 1079 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 LYPD8Q6UX82 237 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 RAB43Q86YS6 212 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 C19orf18Q8NEA5 215 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 OR4M2Q8NGB6 313 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 PHYHIPQ92561 330 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 TTC9Q92623 222 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 PMEPA1Q969W9 287 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 KLHL15Q96M94 604 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 SNX18Q96RF0 628 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 INTS14Q96SY0 518 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 MNTQ99583 582 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 MRPL39Q9NYK5 338 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 LAMP5Q9UJQ1 280 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 HRH3Q9Y5N1 445 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 PRSS37A4D1T9 235 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 NTN3O00634 580 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 OR2T1O43869 369 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 TRIM3O75382 744 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 RPP14O95059 124 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 OR6A2O95222 327 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 ZNF28P17035 718 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 DLX5P56178 289 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 SIGLEC14Q08ET2 396 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 YIF1BQ5BJH7 314 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 LIPNQ5VXI9 398 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 EGFL6Q8IUX8 553 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 YIPF7Q8N8F6 280 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 MAP6Q96JE9 813 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 MMP28Q9H239 520 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 NOX4Q9NPH5 578 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 MYOTQ9UBF9 498 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 FKBP7Q9Y680 259 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 PIN1P1O15428 100 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 CYC1P08574 325 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 EPXP11678 715 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 PSKH1P11801 424 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 ATF1P18846 271 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 ALOX5APP20292 161 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 IL11P20809 199 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 RBMS1P29558 406 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 HOXD12P35452 270 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 TRIM61Q5EBN2 209 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 FAM69BQ5VUD6 431 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 ARSKQ6UWY0 536 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 DPY19L4Q7Z388 723 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 BMPERQ8N8U9 685 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 OR6S1Q8NH40 331 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 NPAP1Q9NZP6 1156 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 VSX1Q9NZR4 365 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 B9D1Q9UPM9 204 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 A0A087WV48 116 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 ZNF879B4DU55 563 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 KRT8P05787 483 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 TALDO1P37837 337 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 RPS27P42677 84 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 RDH10Q8IZV5 341 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 KCNJ15Q99712 375 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 KLRF1Q9NZS2 232 aa19.03■□□□□ 0.64
CCDC88B-208ENST00000492980 COL6A3P12111 3177 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 OR2J2O76002 312 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 APOBEC1P41238 236 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 KIR2DL3P43628 341 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 DUSP3P51452 185 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 INSM1Q01101 510 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 MRPL28Q13084 256 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 ALKBH1Q13686 389 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 UBE2J2Q8N2K1 259 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 SCAIQ8N9R8 606 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 OR5H6Q8NGV6 325 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 HAVCR2Q8TDQ0 301 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 WDR54Q9H977 334 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 ABRACLQ9P1F3 81 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 VDAC3Q9Y277 283 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 AK6Q9Y3D8 172 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 TMEM14AQ9Y6G1 99 aa19.02■□□□□ 0.64
CCDC88B-208ENST00000492980 ACOD1A6NK06 481 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 PTGDSP41222 190 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 MAP2K3P46734 347 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 EGR3Q06889 387 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 FOXF1Q12946 379 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 FRRS1LQ9P0K9 344 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 IKZF2Q9UKS7 526 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 A0A0B4J203 849 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 TFECO14948 347 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 SNRPBP14678 240 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 SRMP19623 302 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 TMED10P49755 219 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 FAM199XQ6PEV8 388 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 DTX3Q8N9I9 347 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 ZBTB8BQ8NAP8 495 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 OR10G3Q8NGC4 313 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms