RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 ZNF566Q969W8 418 aa13.9□□□□□ -0.18
C9orf3-219ENST00000488186 DUS3LQ96G46 650 aaKnown RBP13.9□□□□□ -0.18
C9orf3-219ENST00000488186 OR2M2Q96R28 347 aa13.9□□□□□ -0.18
C9orf3-219ENST00000488186 POLDIP3Q9BY77 421 aaKnown RBP13.9□□□□□ -0.18
C9orf3-219ENST00000488186 ZNF556Q9HAH1 456 aa13.9□□□□□ -0.18
C9orf3-219ENST00000488186 SLC7A10Q9NS82 523 aa13.9□□□□□ -0.18
C9orf3-219ENST00000488186 VNN3Q9NY84 501 aa13.9□□□□□ -0.18
C9orf3-219ENST00000488186 MGAT4BQ9UQ53 548 aa13.9□□□□□ -0.18
C9orf3-219ENST00000488186 GPR52Q9Y2T5 361 aa13.9□□□□□ -0.18
C9orf3-219ENST00000488186 M0R3G1 203 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 PTP4A3O75365 173 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 LYZL6O75951 148 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 IGHG1P01857 330 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 TSPAN19P0C672 248 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 CDH2P19022 906 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-219ENST00000488186 GSTM3P21266 225 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 CSNK1A1P48729 337 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 IST1P53990 364 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 CLRN1P58418 232 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 RPS4XP62701 263 aaKnown RBP13.89□□□□□ -0.19
C9orf3-219ENST00000488186 ATP6AP1Q15904 470 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 ACKR1Q16570 336 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 C9orf135Q5VTT2 229 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 ANKRD34AQ69YU3 496 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 STAC2Q6ZMT1 411 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 BHLHA15Q7RTS1 189 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-219ENST00000488186 DMRTC2Q8IXT2 367 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-219ENST00000488186 LINC01560Q8TB33 94 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 FANK1Q8TC84 345 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 GTPBP3Q969Y2 492 aaKnown RBP13.89□□□□□ -0.19
C9orf3-219ENST00000488186 SLC25A44Q96H78 314 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-219ENST00000488186 LRR1Q96L50 414 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 MED18Q9BUE0 208 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 LINC00470Q9BZP3 86 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 TXNIPQ9H3M7 391 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 DENND2DQ9H6A0 471 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-219ENST00000488186 TAS2R16Q9NYV7 291 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 KIF17Q9P2E2 1029 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 GRHPRQ9UBQ7 328 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 MALT1Q9UDY8 824 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 SIGLEC7Q9Y286 467 aa13.89□□□□□ -0.19
C9orf3-219ENST00000488186 CACNA1DQ01668 2161 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 A6NIZ1 184 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 XKRYO14609 159 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 UPK3AO75631 287 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ZNF432O94892 652 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 PPP3CBP16298 524 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 PSMB1P20618 241 aaKnown RBP13.88□□□□□ -0.19
C9orf3-219ENST00000488186 IGHV1-2P23083 117 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 MPGP29372 298 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 SLC6A6P31641 620 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ACVR1BP36896 505 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 RPS6KA3P51812 740 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 RAP1BP61224 184 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 RPL27P61353 136 aaKnown RBP13.88□□□□□ -0.19
C9orf3-219ENST00000488186 RAP1AP62834 184 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ERVK-25P63136 954 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 OR7E24Q6IFN5 339 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ALKBH2Q6NS38 261 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 RPL13AP3Q6NVV1 102 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 C20orf196Q8IYI0 205 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ATG16L2Q8NAA4 619 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 OR52L1Q8NGH7 329 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 LRTOMTQ8WZ04 291 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ALKBH3Q96Q83 286 aaPredicted RBP13.88□□□□□ -0.19
C9orf3-219ENST00000488186 FEVQ99581 238 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 GPA33Q99795 319 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 USB1Q9BQ65 265 aaKnown RBP13.88□□□□□ -0.19
C9orf3-219ENST00000488186 KATNB1Q9BVA0 655 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 IL20RAQ9UHF4 553 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ZNF346Q9UL40 294 aaKnown RBP13.88□□□□□ -0.19
C9orf3-219ENST00000488186 ITPR2Q14571 2701 aa13.88□□□□□ -0.19
C9orf3-219ENST00000488186 SH3D21A4FU49 640 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 ANKRD65E5RJM6 399 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 KLF4O43474 513 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 CD14P08571 375 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 NR2C1P13056 603 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 ANXA8P13928 327 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 ACADSP16219 412 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 HOXC12P31275 282 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 GSSP48637 474 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 ROR2Q01974 943 aaKnown RBP13.87□□□□□ -0.19
C9orf3-219ENST00000488186 LGALS3BPQ08380 585 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 COX10Q12887 443 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 TSC22D1Q15714 1073 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 STK11Q15831 433 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 RFX4Q33E94 735 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 FAM205BPQ63HN1 556 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 NHLRC1Q6VVB1 395 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 DPY19L2P2Q6ZN68 376 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 AMIGO2Q86SJ2 522 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 HIPK1Q86Z02 1210 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 ZNF433Q8N7K0 673 aaPredicted RBP13.87□□□□□ -0.19
C9orf3-219ENST00000488186 OR5K1Q8NHB7 308 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 ASB10Q8WXI3 467 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 MUCL1Q96DR8 90 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 NRBF2Q96F24 287 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 SAMD8Q96LT4 415 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 RBP7Q96R05 134 aa13.87□□□□□ -0.19
C9orf3-219ENST00000488186 IFT27Q9BW83 186 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms