RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 MAGEE2Q8TD90 523 aaPredicted RBP12.89□□□□□ -0.35
LIMS3-205ENST00000487150 ZC3HAV1LQ96H79 300 aaKnown RBP12.89□□□□□ -0.35
LIMS3-205ENST00000487150 RSRC1Q96IZ7 334 aaKnown RBP12.89□□□□□ -0.35
LIMS3-205ENST00000487150 MUS81Q96NY9 551 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 POLDIP3Q9BY77 421 aaKnown RBP12.89□□□□□ -0.35
LIMS3-205ENST00000487150 MED29Q9NX70 200 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 ZNF99A8MXY4 864 aaPredicted RBP12.88□□□□□ -0.35
LIMS3-205ENST00000487150 TNFRSF11BO00300 401 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 IGHMP01871 453 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 HLA-DOBP13765 273 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 MAKP20794 623 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 FPR3P25089 353 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 RPL4P36578 427 aaKnown RBP12.88□□□□□ -0.35
LIMS3-205ENST00000487150 OMPP47874 163 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 LIMS1P48059 325 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 HMGA2P52926 109 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 CLRN1P58418 232 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 UBE2NP61088 152 aaKnown RBP12.88□□□□□ -0.35
LIMS3-205ENST00000487150 TAB1Q15750 504 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 ZBED5Q49AG3 693 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 C1orf146Q5VVC0 180 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 OR2T5Q6IEZ7 315 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 RPL13AP3Q6NVV1 102 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 WFDC8Q8IUA0 241 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 ADGRG5Q8IZF4 528 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 NOXO1Q8NFA2 376 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 OR13C2Q8NGS9 318 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 OR2T29Q8NH02 315 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 NANOS1Q8WY41 292 aaKnown RBP12.88□□□□□ -0.35
LIMS3-205ENST00000487150 FAM46AQ96IP4 442 aaKnown RBP12.88□□□□□ -0.35
LIMS3-205ENST00000487150 FUZQ9BT04 418 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 TXNIPQ9H3M7 391 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 CRLF2Q9HC73 371 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 SLC7A8Q9UHI5 535 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 SAMHD1Q9Y3Z3 626 aaKnown RBP12.88□□□□□ -0.35
LIMS3-205ENST00000487150 HCFC1P51610 2035 aa12.88□□□□□ -0.35
LIMS3-205ENST00000487150 PKDREJQ9NTG1 2253 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 M0R3G1 203 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 MGRN1O60291 552 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 UPK3AO75631 287 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 NDUFB2O95178 105 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 HRGP04196 525 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 F13BP05160 661 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 PRF1P14222 555 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 GABRA6Q16445 453 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 ACKR1Q16570 336 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 NRN1LQ496H8 165 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 CARD17Q5XLA6 110 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 GPR139Q6DWJ6 353 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 TBPL2Q6SJ96 375 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 TMEM108Q6UXF1 575 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 OR1K1Q8NGR3 316 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 OR51A7Q8NH64 312 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 ASB10Q8WXI3 467 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 RADILQ96JH8 1075 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 ALG12Q9BV10 488 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 EMC6Q9BV81 110 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 CHID1Q9BWS9 393 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 SMURF2Q9HAU4 748 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 GPR35Q9HC97 309 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 SLC17A5Q9NRA2 495 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 GLTPQ9NZD2 209 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 MGAT4BQ9UQ53 548 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 POFUT2Q9Y2G5 429 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 LYVE1Q9Y5Y7 322 aa12.87□□□□□ -0.35
LIMS3-205ENST00000487150 TRAV27A0A087WT01 109 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 ARPC4-TTLL3A0A0A6YYG9 625 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.86□□□□□ -0.35
LIMS3-205ENST00000487150 TCRBV3S1A0A5B6 114 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 ARRDC5A6NEK1 342 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 UNC119BA6NIH7 251 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 DEFB108AA8MXU0 73 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 XKRYO14609 159 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 GNGT2O14610 69 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 AHCYL1O43865 530 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CCNB2O95067 398 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CST1P01037 141 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 THBDP07204 575 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CD14P08571 375 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 PGA4P0DJD7 388 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 PGA3P0DJD8 388 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CDH2P19022 906 aaPredicted RBP12.86□□□□□ -0.35
LIMS3-205ENST00000487150 ZNF84P51523 738 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CTXN1P60606 82 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 RPL27P61353 136 aaKnown RBP12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CAMK2DQ13557 499 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 MELKQ14680 651 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 TSC22D1Q15714 1073 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CEACAM16Q2WEN9 425 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 NHLRC1Q6VVB1 395 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 DPPA2Q7Z7J5 298 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 C10orf67Q8IYJ2 551 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 MOSPD2Q8NHP6 518 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 FANK1Q8TC84 345 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 GNPDA2Q8TDQ7 276 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CANT1Q8WVQ1 401 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 TMEM54Q969K7 222 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 PIK3IP1Q96FE7 263 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 TXNDC15Q96J42 360 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 LURAP1Q96LR2 239 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms