RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PSMD9O00233 223 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 BCL2L11O43521 198 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 PRICKLE3O43900 615 aaPredicted RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 NGFRP08138 427 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 CPMP14384 443 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 CSF2RBP32927 897 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 ARHGDIBP52566 201 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 SSBP1Q04837 148 aaKnown RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 HFEQ30201 348 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 ANKRD16Q6P6B7 361 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 LRRTM1Q86UE6 522 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 OR4N5Q8IXE1 308 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 RBM18Q96H35 190 aaKnown RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 NMNAT3Q96T66 252 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 GAS2L1Q99501 681 aaPredicted RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 IL21RQ9HBE5 538 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 BRINP1O60477 761 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 CD8AP01732 235 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 SOX2P48431 317 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 LUMP51884 338 aaPredicted RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 DHCR24Q15392 516 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 EXOSC6Q5RKV6 272 aaKnown RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 ZCCHC12Q6PEW1 402 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 DPY19L2P2Q6ZN68 376 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 USP53Q70EK8 1073 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 NPEPL1Q8NDH3 523 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 MRPL38Q96DV4 380 aaKnown RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 ARSGQ96EG1 525 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 POFUT1Q9H488 388 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 POLE3Q9NRF9 147 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 RXFP3Q9NSD7 469 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 WSB2Q9NYS7 404 aaPredicted RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 ADAM18Q9Y3Q7 739 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 A0A1B0GVT2 93 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 RAB19A4D1S5 217 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 OR14I1A6ND48 311 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ZNF432O94892 652 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 GLCEO94923 617 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 RPP14O95059 124 aaKnown RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 MELTFP08582 738 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ADH5P11766 374 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 GRPRP30550 384 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 RAB13P51153 203 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ACTBP60709 375 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ACTG1P63261 375 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ALKBH1Q13686 389 aaKnown RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 ZNF684Q5T5D7 378 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 FHL5Q5TD97 284 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 GLT8D1Q68CQ7 371 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ZNF425Q6IV72 752 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 JMJD6Q6NYC1 403 aaPredicted RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 STEAP1BQ6NZ63 245 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 LPCAT3Q6P1A2 487 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ZNF614Q8N883 585 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ZNF417Q8TAU3 575 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 ZNRF4Q8WWF5 429 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 PTCHD1Q96NR3 888 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 POTEKPQ9BYX7 375 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 SLC19A3Q9BZV2 496 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 FKRPQ9H9S5 495 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 MKKSQ9NPJ1 570 aaPredicted RBP12.12□□□□□ -0.47
USP40-214ENST00000483519 COMMD9Q9P000 198 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 MOKQ9UQ07 419 aa12.12□□□□□ -0.47
USP40-214ENST00000483519 TRBV5-5A0A0J9YX44 114 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 OR5K4A6NMS3 321 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 F8W036 122 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 CTAG2O75638 210 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 CXCL14O95715 111 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 IL33O95760 270 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 MAS1P04201 325 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 ITGB2P05107 769 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 ADH1AP07327 375 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 OR4E1P0C645 316 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 PVALBP20472 110 aaPredicted RBP12.11□□□□□ -0.47
USP40-214ENST00000483519 PRSS3P35030 304 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 P2RY2P41231 377 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 PLAURQ03405 335 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 PAN3Q58A45 887 aaKnown RBP12.11□□□□□ -0.47
USP40-214ENST00000483519 LY6G6FQ5SQ64 297 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 OR2W3Q7Z3T1 314 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 STEAP2Q8NFT2 490 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 STK35Q8TDR2 534 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 NXPE3Q969Y0 559 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 RAB7BQ96AH8 199 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 ZNF471Q9BX82 626 aaPredicted RBP12.11□□□□□ -0.47
USP40-214ENST00000483519 NMNAT2Q9BZQ4 307 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 BIN3Q9NQY0 253 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 SPHK1Q9NYA1 384 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 GOLGA4Q13439 2230 aaKnown RBP12.11□□□□□ -0.47
USP40-214ENST00000483519 MYO9BQ13459 2157 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 A0A087WV62 115 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 TMEM82A0PJX8 343 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 FAM221BA6H8Z2 402 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 OR6C68A6NDL8 312 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 OR5H14A6NHG9 310 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 MOSPD3O75425 235 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 CD3DP04234 171 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 PEBP1P30086 187 aaKnown RBP12.11□□□□□ -0.47
USP40-214ENST00000483519 RPS15AP62244 130 aaKnown RBP12.11□□□□□ -0.47
USP40-214ENST00000483519 PPIAP62937 165 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms