RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SCELO95171 688 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 VENTXO95231 258 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 EPOP01588 193 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 FGF4P08620 206 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 TFPTP0C1Z6 253 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CFL1P23528 166 aaKnown RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 CXCR2P25025 360 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 RORAP35398 523 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 YAP1P46937 504 aaKnown RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 PKNOX1P55347 436 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 DSTNP60981 165 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 DYNLT1P63172 113 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CTAG1AP78358 180 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 SLC25A11Q02978 314 aaKnown RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 MAB21L1Q13394 359 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 LRIT3Q3SXY7 679 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 FUT11Q495W5 492 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 FKBP1CQ5VVH2 108 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 ANKRD22Q5VYY1 191 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 LIPJQ5W064 366 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 REP15Q6BDI9 236 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 ZNF470Q6ECI4 717 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CNSTQ6PJW8 725 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 METAP1DQ6UB28 335 aaPredicted RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 CCBE1Q6UXH8 406 aaPredicted RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 PAGE2Q7Z2X7 111 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 UBQLNLQ8IYU4 475 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 GDPD1Q8N9F7 314 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 TMEM161BQ8NDZ6 487 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 OR8J3Q8NGG0 315 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 OR10T2Q8NGX3 314 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 OR5K1Q8NHB7 308 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 ITFG1Q8TB96 612 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 LRRC20Q8TCA0 184 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 ZFAND1Q8TCF1 268 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 ACER1Q8TDN7 264 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CANT1Q8WVQ1 401 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 HTR3CQ8WXA8 447 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 SLC38A4Q969I6 547 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CREB3L1Q96BA8 519 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 C19orf60Q96EN9 201 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 PCED1BQ96HM7 432 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CCDC115Q96NT0 180 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 RPRD1AQ96P16 312 aaPredicted RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 SLC30A2Q9BRI3 323 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 CBWD1Q9BRT8 395 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 PELOQ9BRX2 385 aaKnown RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 CCDC90BQ9GZT6 254 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 ARMC7Q9H6L4 198 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 GORASP2Q9H8Y8 452 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 LIN28AQ9H9Z2 209 aaKnown RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 FOLH1BQ9HBA9 442 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 TAS2R9Q9NYW1 312 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 RBAKQ9NYW8 714 aaPredicted RBP4.52□□□□□ -1.69
USP40-213ENST00000483216 CNIH4Q9P003 139 aa4.52□□□□□ -1.69
USP40-213ENST00000483216 A0A0U1RQK1 487 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 LOC100130705A0A1B0GUX0 176 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 LOC105371267A0A1B0GV96 52 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 A0A1W2PP18 115 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 IRGMA1A4Y4 181 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ZNF320A2RRD8 509 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 FOXI3A8MTJ6 420 aaPredicted RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 K7ERI5 159 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 E2F3O00716 465 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 CYB561D2O14569 222 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 EI24O14681 340 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ZBTB14O43829 449 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ORC5O43913 435 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 AIREO43918 545 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 DPM1O60762 260 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 SCN2BO60939 215 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ANXA9O76027 345 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 TSPAN12O95859 305 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 C1QBP02746 253 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 C2P06681 752 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 RETP07949 1114 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 OR9G9P0C7N8 305 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 FOSL2P15408 326 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ATF6P18850 670 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 CPN2P22792 545 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 MIPP30301 263 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ID1P41134 155 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 MATKP42679 507 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 INPP1P49441 399 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 SLC7A2P52569 658 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 RAB10P61026 200 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 RPL27P61353 136 aaKnown RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 CDH17Q12864 832 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 NME3Q13232 169 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 QPRTQ15274 297 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 OR1C1Q15619 314 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 STXBP2Q15833 593 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 YIF1BQ5BJH7 314 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 BRMS1LQ5PSV4 323 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 TPRG1LQ5T0D9 272 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 PDZK1Q5T2W1 519 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 LINC00242Q5T6M2 205 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 C1orf189Q5VU69 101 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 MLIPQ5VWP3 458 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ERICH5Q6P6B1 374 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms