RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 RABL2BQ9UNT1 228 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 TP53TG5Q9Y2B4 290 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 N6AMT1Q9Y5N5 214 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CACNG2Q9Y698 323 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CDHR2Q9BYE9 1310 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 IGKV2D-24A0A075B6R9 120 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 TRIM64CA6NLI5 447 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 C12orf71A8MTZ7 269 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 CCL21O00585 134 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 UPK3AO75631 287 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 NDUFB10O96000 172 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 CST1P01037 141 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 ALDOBP05062 364 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 UQCRFS1P1P0C7P4 283 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 MCF2P10911 925 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 PSG2P11465 335 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 CRISP2P16562 243 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC2A5P22732 501 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 CRYBB2P43320 205 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 RPS10P46783 165 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 NPBWR2P48146 333 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 ATP5IP56385 69 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 REG3AQ06141 175 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 EBI3Q14213 229 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 MPPED2Q15777 294 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 SSX2Q16385 188 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 CCDC183Q5T5S1 534 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 ZYG11AQ6WRX3 759 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 KDM7AQ6ZMT4 941 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 LRRC74BQ6ZQY2 392 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC25A48Q6ZT89 311 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 COX15Q7KZN9 410 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 TAS2R42Q7RTR8 314 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 FAM228AQ86W67 206 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 CDH26Q8IXH8 852 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 ZADH2Q8N4Q0 377 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 VN1R2Q8NFZ6 395 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 NPBQ8NG41 125 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 OR4F15Q8NGB8 312 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC2A14Q8TDB8 520 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 ACER1Q8TDN7 264 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 PHF3Q92576 2039 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 OR2M2Q96R28 347 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 SORT1Q99523 831 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 TMEM59Q9BXS4 323 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 PKIBQ9C010 78 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 RANBP3Q9H6Z4 567 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 GLRX2Q9NS18 164 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 KLHL28Q9NXS3 571 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 SPATA7Q9P0W8 599 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 XCL2Q9UBD3 114 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 PISDQ9UG56 409 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 IKZF2Q9UKS7 526 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 PRG3Q9Y2Y8 225 aaPredicted RBP1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 HMCN1Q96RW7 5635 aa1.87□□□□□ -2.11
CCDC88A-212ENST00000474059 MSH6P52701 1360 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 PDS5BQ9NTI5 1447 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 ERVV-1B6SEH8 477 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC31A2O15432 143 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 PSTPIP1O43586 416 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 MGRN1O60291 552 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 ERLIN2O94905 339 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 HPGDP15428 266 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 TCN1P20061 433 aaPredicted RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 CCNCP24863 283 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 HNRNPH3P31942 346 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 ATP5C1P36542 298 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 GPR6P46095 362 aaPredicted RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 LHX2P50458 406 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 FBXW4P57775 412 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 PLP1P60201 277 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 KCNJ2P63252 427 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 ENPEPQ07075 957 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 LRRC74AQ0VAA2 488 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 FZD2Q14332 565 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 LRRC10Q5BKY1 277 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 FRMPD2BQ6IN97 320 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 LCN12Q6JVE5 192 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 RNASEKQ6P5S7 137 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 CNIH2Q6PI25 160 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 C19orf35Q6ZS72 473 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF621Q6ZSS3 439 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 PUSL1Q8N0Z8 303 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF433Q8N7K0 673 aaPredicted RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF557Q8N988 423 aaPredicted RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 OR10G9Q8NGN4 311 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 OR2G2Q8NGZ5 317 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 KCNG3Q8TAE7 436 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 RNF139Q8WU17 664 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 MED8Q96G25 268 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 CNDP1Q96KN2 507 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 HSFY1Q96LI6 401 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 CLMPQ9H6B4 373 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 MRPL47Q9HD33 250 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 EXD2Q9NVH0 621 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC2A8Q9NY64 477 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC25A37Q9NYZ2 338 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 TRAPPC4Q9Y296 219 aa1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 CSDC2Q9Y534 153 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-212ENST00000474059 IGKV1D-13A0A0B4J2D9 117 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms