RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 H0YL77 283 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 M0QZ92 97 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 CASKO14936 926 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TCAPO15273 167 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 INPP4BO15327 924 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ARPC5O15511 151 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ITM2AO43736 263 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 KLRC4O43908 158 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 GRAP2O75791 330 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ORM1P02763 201 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 CD5P06127 495 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 UMODP07911 640 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 SMIM18P0DKX4 95 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 CDH1P12830 882 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 GNLYP22749 145 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 GJB2P29033 226 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 HPCAL1P37235 193 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 DDOSTP39656 456 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 GPR1P46091 355 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 GLIPR1P48060 266 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 HOXA1P49639 335 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 CDH12P55289 794 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 OR4D2P58180 307 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 RANP62826 216 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ERVK-8P63133 956 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TFAMQ00059 246 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF45Q02386 682 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 OC90Q02509 493 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 POU3F1Q03052 451 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 C2orf80Q0P641 193 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 RFX4Q33E94 735 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TMEM176BQ3YBM2 270 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 LCN10Q6JVE6 187 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 FAM45BPQ6NSW5 357 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 FAHD1Q6P587 224 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 PAQR6Q6TCH4 344 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 DRAM2Q6UX65 266 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 COX15Q7KZN9 410 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 HPS6Q86YV9 775 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 WDFY1Q8IWB7 410 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 RCOR2Q8IZ40 523 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF444Q8N0Y2 327 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 EID3Q8N140 333 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF561Q8N587 486 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 LFNGQ8NES3 379 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 NOXO1Q8NFA2 376 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 OR52I1Q8NGK6 324 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 RNASEH2CQ8TDP1 164 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ATOH1Q92858 354 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 RPEQ96AT9 228 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 FAF2Q96CS3 445 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 NUS1Q96E22 293 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ZIM3Q96PE6 472 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 NODALQ96S42 347 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 S1PR3Q99500 378 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TSC22D3Q99576 134 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 MAP3K3Q99759 626 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 MICU1Q9BPX6 476 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC35A5Q9BS91 424 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 YTHDF1Q9BYJ9 559 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 PRRG4Q9BZD6 226 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ELOVL4Q9GZR5 314 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 CSTL1Q9H114 145 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ING2Q9H160 280 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TUBB1Q9H4B7 451 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 C5orf66Q9H5L9 145 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 DDX31Q9H8H2 851 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 NMUR1Q9HB89 426 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC2A9Q9NRM0 540 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 NLE1Q9NVX2 485 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 C1orf123Q9NWV4 160 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TEX10Q9NXF1 929 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TAS2R1Q9NYW7 299 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 PTTG2Q9NZH5 202 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 PAK5Q9P286 719 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 NDRG3Q9UGV2 375 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TFR2Q9UP52 801 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC6A5Q9Y345 797 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 CPQQ9Y646 472 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ADGRA3Q8IWK6 1321 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 PRSS51A0A1B0GVH4 220 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ATP6AP2A0A1C7CYW4 349 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC22A20A6NK97 555 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RFPL4AA6NLU0 287 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 HIDE1A8MVS5 230 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RFPL4AL1F8VTS6 287 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SIRPB1O00241 398 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SULT1C2O00338 296 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 NTN3O00634 580 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC31A1O15431 190 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 STK17BO94768 372 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 EML2O95834 649 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 IFNA21P01568 189 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 P04436 131 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 IGF1P05019 195 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 HCKP08631 526 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ANXA3P12429 323 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 AADACP22760 399 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ELK4P28324 431 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RBM34P42696 430 aaKnown RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms