RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 TNFRSF13CQ96RJ3 184 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 EMC6Q9BV81 110 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 TXNIPQ9H3M7 391 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 NGBQ9NPG2 151 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 CRIM1Q9NZV1 1036 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 CENPBD1B2RD01 187 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 SSTR2P30874 369 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 CCKARP32238 428 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 CLRN1P58418 232 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 CTXN1P60606 82 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 ROR2Q01974 943 aaKnown RBP17.45■□□□□ 0.38
COL9A3-204ENST00000463487 SNTB1Q13884 538 aaKnown RBP17.45■□□□□ 0.38
COL9A3-204ENST00000463487 ACKR1Q16570 336 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 RPL13AP3Q6NVV1 102 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 C1orf94Q6P1W5 598 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 C17orf78Q8N4C9 275 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 OR4C15Q8NGM1 316 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 HSD17B8Q92506 261 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 S100PBPQ96BU1 408 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 MUCL1Q96DR8 90 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 TXNDC15Q96J42 360 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 POLDIP3Q9BY77 421 aaKnown RBP17.45■□□□□ 0.38
COL9A3-204ENST00000463487 ULBP2Q9BZM5 246 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 ARMC1Q9NVT9 282 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 SIGLEC7Q9Y286 467 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 AP4S1Q9Y587 144 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 FREM1Q5H8C1 2179 aa17.45■□□□□ 0.38
COL9A3-204ENST00000463487 A6NIZ1 184 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 ENTPD5O75356 428 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 RAD51DO75771 328 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 IGHMP01871 453 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 GSTM3P21266 225 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 RAP1BP61224 184 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 RPL27P61353 136 aaKnown RBP17.44■□□□□ 0.38
COL9A3-204ENST00000463487 RAP1AP62834 184 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 TSPAN31Q12999 210 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 TOP3AQ13472 1001 aaPredicted RBP17.44■□□□□ 0.38
COL9A3-204ENST00000463487 CCNIQ14094 377 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 MELKQ14680 651 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 STK11Q15831 433 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 TIMM23BQ5SRD1 257 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 ANKRD34AQ69YU3 496 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 ZNF787Q6DD87 383 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 PGBD2Q6P3X8 592 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 SMARCD3Q6STE5 483 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 KLHL24Q6TFL4 600 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 ZER1Q7Z7L7 766 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 C20orf196Q8IYI0 205 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 AQP11Q8NBQ7 271 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 FANK1Q8TC84 345 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 FNDC8Q8TC99 324 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 UTP4Q969X6 686 aaKnown RBP17.44■□□□□ 0.38
COL9A3-204ENST00000463487 C14orf79Q96F83 325 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 DUS3LQ96G46 650 aaKnown RBP17.44■□□□□ 0.38
COL9A3-204ENST00000463487 WFIKKN1Q96NZ8 548 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 GRHPRQ9UBQ7 328 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 MGAT4BQ9UQ53 548 aa17.44■□□□□ 0.38
COL9A3-204ENST00000463487 ARRDC5A6NEK1 342 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 OR5H1A6NKK0 313 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 RPL36A-HNRNPH2H7BZ11 118 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 M0R3G1 203 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 PDLIM1O00151 329 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 KLF4O43474 513 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 UPK3AO75631 287 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 CD14P08571 375 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ITGA5P08648 1049 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ACADSP16219 412 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 FASP25445 335 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 GSSP48637 474 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ACTR3P61158 418 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ZSCAN26Q16670 478 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 FBXW10Q5XX13 1052 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ZFP1Q6P2D0 407 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 NHLRC1Q6VVB1 395 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 OR10G2Q8NGC3 310 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 OR9Q2Q8NGE9 314 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 OR52L1Q8NGH7 329 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 GIPC3Q8TF64 312 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ASB10Q8WXI3 467 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 SLCO4A1Q96BD0 722 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ZC3HAV1LQ96H79 300 aaKnown RBP17.43■□□□□ 0.38
COL9A3-204ENST00000463487 BDH2Q9BUT1 245 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 ZNF556Q9HAH1 456 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 CRLF2Q9HC73 371 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 GPR35Q9HC97 309 aa17.43■□□□□ 0.38
COL9A3-204ENST00000463487 XKRYO14609 159 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 TIPRLO75663 272 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 CDH2P19022 906 aaPredicted RBP17.42■□□□□ 0.38
COL9A3-204ENST00000463487 PAX7P23759 505 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 SLC6A6P31641 620 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 RPS6KA3P51812 740 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 TSC22D1Q15714 1073 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 C9orf135Q5VTT2 229 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 HIST2H2BCQ6DN03 193 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 GPR139Q6DWJ6 353 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 DPY19L2P2Q6ZN68 376 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 IGFN1Q86VF2 1251 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 NOXO1Q8NFA2 376 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 MUS81Q96NY9 551 aa17.42■□□□□ 0.38
COL9A3-204ENST00000463487 KATNB1Q9BVA0 655 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms