RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 IRX4P78413 519 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SHC2P98077 582 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 HGFACQ04756 655 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SRSF1Q07955 248 aaKnown RBP eCLIP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ABHD18Q0P651 414 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 KEAP1Q14145 624 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 DOC2BQ14184 412 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 NFATC4Q14934 902 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 TNXAQ16473 311 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ISXQ2M1V0 245 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 PGGHGQ32M88 737 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 AVPI1Q5T686 147 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 C9orf135Q5VTT2 229 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 WDR25Q64LD2 544 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 TMEM182Q6ZP80 229 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF605Q86T29 641 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CPNE9Q8IYJ1 553 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 TCTE3Q8IZS6 198 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 PACRGLQ8N7B6 248 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR11H1Q8NG94 326 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR4F15Q8NGB8 312 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR11H2Q8NH07 326 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR8U1Q8NH10 309 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 FEZF2Q8TBJ5 459 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ZCCHC10Q8TBK6 192 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SORCS1Q8WY21 1168 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ANKRD9Q96BM1 317 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF775Q96BV0 537 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR8B4Q96RC9 309 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ERGIC2Q96RQ1 377 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 GPA33Q99795 319 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SCNM1Q9BWG6 230 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 BEX2Q9BXY8 128 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 REG4Q9BYZ8 158 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 XYLT2Q9H1B5 865 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 PTGES2Q9H7Z7 377 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SGK2Q9HBY8 427 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 DDIT4Q9NX09 232 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 MED11Q9P086 117 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 NXT1Q9UKK6 140 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC6A5Q9Y345 797 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 Q9Y3F1 56 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ADGRA3Q8IWK6 1321 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3DA0A087WVF3 549 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3IA0A087WXS9 549 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3EA0A087X179 549 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TMEM213A2RRL7 107 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 GJE1A6NN92 205 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3LB9A6J9 549 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 E9PQ18 207 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 RFXANKO14593 260 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MBTPS2O43462 519 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 EDIL3O43854 480 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MRPS14O60783 128 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 LRP3O75074 770 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 DUSP11O75319 330 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 FADS2O95864 444 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TIMP1P01033 207 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MMP1P03956 469 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 RLN1P04808 185 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 CRYGBP07316 175 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 OR8U9P0C7N5 309 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3HP0C7X1 549 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 PET100P0DJ07 73 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 FOLR2P14207 255 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 UCHL3P15374 230 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF182P17025 639 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF28P17035 718 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 ACHEP22303 614 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 IL12AP29459 219 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 GLUD2P49448 558 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NAPAP54920 295 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 RAB5BP61020 215 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 RPL7AP62424 266 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 CNTN1Q12860 1018 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 PRPSAP1Q14558 356 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MAPK11Q15759 364 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 GUCA2BQ16661 112 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 KCTD19Q17RG1 926 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 PYY3Q5JQD4 70 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 GCSAMLQ5JQS6 135 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 SPIN3Q5JUX0 258 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3CQ6IPX1 549 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF774Q6NX45 483 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 DOK6Q6PKX4 331 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NAPRTQ6XQN6 538 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 DEF8Q6ZN54 512 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 FCRLAQ7L513 359 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 AMIGO2Q86SJ2 522 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 ATG4DQ86TL0 474 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MRPL52Q86TS9 123 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3Q8IZP1 549 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MTURNQ8N3F0 131 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 GDPD1Q8N9F7 314 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 FBXO36Q8NEA4 188 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 KLHDC9Q8NEP7 349 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 OR5L1Q8NGL2 311 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 OR1K1Q8NGR3 316 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 WDR36Q8NI36 951 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 GNPDA2Q8TDQ7 276 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms