RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 APOL4Q9BPW4 351 aa9.78□□□□□ -0.84
SCN9A-205ENST00000454569 POLDIP3Q9BY77 421 aaKnown RBP9.78□□□□□ -0.84
SCN9A-205ENST00000454569 FANCFQ9NPI8 374 aa9.78□□□□□ -0.84
SCN9A-205ENST00000454569 HINT3Q9NQE9 182 aaKnown RBP9.78□□□□□ -0.84
SCN9A-205ENST00000454569 MYRFQ9Y2G1 1151 aa9.78□□□□□ -0.84
SCN9A-205ENST00000454569 RELNP78509 3460 aa9.77□□□□□ -0.84
SCN9A-205ENST00000454569 CACNA1CQ13936 2221 aa9.77□□□□□ -0.84
SCN9A-205ENST00000454569 RTTNQ86VV8 2226 aa9.77□□□□□ -0.84
SCN9A-205ENST00000454569 A0A1W2PNV4 684 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 OR6C68A6NDL8 312 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 CLCA1A8K7I4 914 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ARPC3O15145 178 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 SMNDC1O75940 238 aaKnown RBP eCLIP9.77□□□□□ -0.85
SCN9A-205ENST00000454569 OR6A2O95222 327 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 PCYT1AP49585 367 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 RPS6KA3P51812 740 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 PRR20EP86478 221 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 PRR20CP86479 221 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 PRR20DP86480 221 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 PRR20BP86481 221 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 PRR20AP86496 221 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 LGALS3BPQ08380 585 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 BLMHQ13867 455 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 CRMP1Q14194 572 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ANKDD1AQ495B1 522 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ABLIM2Q6H8Q1 611 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 RPL13AP3Q6NVV1 102 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 B3GLCTQ6Y288 498 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 SLC35D2Q76EJ3 337 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 FCRLAQ7L513 359 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.77□□□□□ -0.85
SCN9A-205ENST00000454569 THAP5Q7Z6K1 395 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ADGRE4PQ86SQ3 457 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 SLC37A3Q8NCC5 494 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 NPEPL1Q8NDH3 523 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ADPRHL1Q8NDY3 354 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ZNF519Q8TB69 540 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 HDAC2Q92769 488 aaKnown RBP9.77□□□□□ -0.85
SCN9A-205ENST00000454569 HPS1Q92902 700 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 DTNBP1Q96EV8 351 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 OXGR1Q96P68 337 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 TSSK2Q96PF2 358 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 NMNAT3Q96T66 252 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 SLX1AQ9BQ83 275 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 TXNIPQ9H3M7 391 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 ZNF696Q9H7X3 374 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 AMBNQ9NP70 447 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 DNAJC27Q9NZQ0 273 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 CLEC4AQ9UMR7 237 aa9.77□□□□□ -0.85
SCN9A-205ENST00000454569 IGKV1D-43A0A0B4J1Z2 117 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 DCTN6O00399 190 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 XPNPEP2O43895 674 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 EIF1BO60739 113 aaKnown RBP9.76□□□□□ -0.85
SCN9A-205ENST00000454569 CYTIPO60759 359 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 ENTPD6O75354 484 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 TXNDC12O95881 172 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 IGHMP01871 453 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 GYPBP06028 91 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 ADRA2AP08913 450 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 ACVR1BP36896 505 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 NUDT6P53370 316 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 BIDP55957 195 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 RPL27P61353 136 aaKnown RBP9.76□□□□□ -0.85
SCN9A-205ENST00000454569 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.76□□□□□ -0.85
SCN9A-205ENST00000454569 ITGADQ13349 1161 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 PHYHD1Q5SRE7 291 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 RTL6Q6ICC9 239 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 ALKBH2Q6NS38 261 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 ARHGAP11AQ6P4F7 1023 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 C3P1Q6ZMU1 363 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 SEM1Q6ZVN7 128 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 CREB3L2Q70SY1 520 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 PXKQ7Z7A4 578 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 EGFL6Q8IUX8 553 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 CPOQ8IVL8 374 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 OR9K2Q8NGE7 335 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 OR9Q1Q8NGQ5 310 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 ASB10Q8WXI3 467 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 CPNE4Q96A23 557 aaPredicted RBP9.76□□□□□ -0.85
SCN9A-205ENST00000454569 NAA11Q9BSU3 229 aaPredicted RBP9.76□□□□□ -0.85
SCN9A-205ENST00000454569 CMC2Q9NRP2 79 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 FLVCR1Q9Y5Y0 555 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 POLEQ07864 2286 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 KMT2BQ9UMN6 2715 aaPredicted RBP9.76□□□□□ -0.85
SCN9A-205ENST00000454569 PRR14LQ5THK1 2151 aa9.76□□□□□ -0.85
SCN9A-205ENST00000454569 LOC102725191A0A1B0GVB3 256 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 SLC35F4A4IF30 521 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 TTLL8A6PVC2 850 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 FAM171A2A8MVW0 826 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 ARHGEF9O43307 516 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 GPANK1O95872 356 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 SDHAP31040 664 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 PTGS2P35354 604 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 CLDN17P56750 224 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 CDC42P60953 191 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 PIGFQ07326 219 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 NFATC3Q12968 1075 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 CAMK2DQ13557 499 aa9.75□□□□□ -0.85
SCN9A-205ENST00000454569 KRR1Q13601 381 aaKnown RBP9.75□□□□□ -0.85
SCN9A-205ENST00000454569 ETFDHQ16134 617 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms