RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 UBAP1Q9NZ09 502 aa13.02□□□□□ -0.32
TNF-208ENST00000449264 DNAJC27Q9NZQ0 273 aa13.02□□□□□ -0.32
TNF-208ENST00000449264 KLHL9Q9P2J3 617 aa13.02□□□□□ -0.32
TNF-208ENST00000449264 CLCF1Q9UBD9 225 aa13.02□□□□□ -0.32
TNF-208ENST00000449264 KLHL21Q9UJP4 597 aa13.02□□□□□ -0.32
TNF-208ENST00000449264 ZNF175Q9Y473 711 aa13.02□□□□□ -0.32
TNF-208ENST00000449264 HSPE1-MOB4S4R3N1 261 aa13.02□□□□□ -0.32
TNF-208ENST00000449264 LOC102725191A0A1B0GVB3 256 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 FIGNL2A6NMB9 653 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 AHRRA9YTQ3 701 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 IMPA2O14732 288 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 TXNDC12O95881 172 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 EDN3P14138 238 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 ACVR2AP27037 513 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 RUNX1T1Q06455 604 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 ARMC4Q5T2S8 1044 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 CARD17Q5XLA6 110 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 PLBD1Q6P4A8 553 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 RPTNQ6XPR3 784 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 SLC37A3Q8NCC5 494 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 FAM57AQ8TBR7 257 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 APH1BQ8WW43 257 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 LRR1Q96L50 414 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 MED20Q9H944 212 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 HINT3Q9NQE9 182 aaKnown RBP13.02□□□□□ -0.33
TNF-208ENST00000449264 FLVCR1Q9Y5Y0 555 aa13.02□□□□□ -0.33
TNF-208ENST00000449264 SLC35F4A4IF30 521 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 NPIPB13A6NJU9 1138 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 NPIPB4C9JG80 1138 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 PRR23D1E9PI22 279 aaPredicted RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 MPZL2O60487 215 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 SLC19A2O60779 497 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 PRR23D2P0DMB1 279 aaPredicted RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 GABRB1P18505 474 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 PAICSP22234 425 aaKnown RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 FMO3P31513 532 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 CDKN2AP42771 156 aaKnown RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 SLC16A1P53985 500 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 ITGADQ13349 1161 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 CAMK2DQ13557 499 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 RNPS1Q15287 305 aaKnown RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 NIPAL3Q6P499 406 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 C3P1Q6ZMU1 363 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 CXXC5Q7LFL8 322 aaKnown RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 ADGRE4PQ86SQ3 457 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 CPOQ8IVL8 374 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 SYT14Q8NB59 555 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 BBS1Q8NFJ9 593 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 OR9Q1Q8NGQ5 310 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 RHOXF1Q8NHV9 184 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 TRUB1Q8WWH5 349 aaKnown RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 HDAC2Q92769 488 aaKnown RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 CALHM2Q9HA72 323 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 RPRD1BQ9NQG5 326 aaKnown RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 EMC3Q9P0I2 261 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 SH3BGRL2Q9UJC5 107 aa13.01□□□□□ -0.33
TNF-208ENST00000449264 ING1Q9UK53 422 aaPredicted RBP13.01□□□□□ -0.33
TNF-208ENST00000449264 OR6C68A6NDL8 312 aa13□□□□□ -0.33
TNF-208ENST00000449264 A6NIZ1 184 aa13□□□□□ -0.33
TNF-208ENST00000449264 ZNF726A6NNF4 738 aa13□□□□□ -0.33
TNF-208ENST00000449264 PRRG2O14669 202 aa13□□□□□ -0.33
TNF-208ENST00000449264 ATXN7O15265 892 aaPredicted RBP13□□□□□ -0.33
TNF-208ENST00000449264 AKAP8O43823 692 aaKnown RBP13□□□□□ -0.33
TNF-208ENST00000449264 WDR1O75083 606 aa13□□□□□ -0.33
TNF-208ENST00000449264 WBP4O75554 376 aaKnown RBP13□□□□□ -0.33
TNF-208ENST00000449264 SMNDC1O75940 238 aaKnown RBP eCLIP13□□□□□ -0.33
TNF-208ENST00000449264 RENP00797 406 aa13□□□□□ -0.33
TNF-208ENST00000449264 GYPBP06028 91 aa13□□□□□ -0.33
TNF-208ENST00000449264 GABRA1P14867 456 aa13□□□□□ -0.33
TNF-208ENST00000449264 NUDT6P53370 316 aa13□□□□□ -0.33
TNF-208ENST00000449264 CLRN1P58418 232 aa13□□□□□ -0.33
TNF-208ENST00000449264 RAP1BP61224 184 aa13□□□□□ -0.33
TNF-208ENST00000449264 SNRPGP62308 76 aaKnown RBP13□□□□□ -0.33
TNF-208ENST00000449264 RAP1AP62834 184 aa13□□□□□ -0.33
TNF-208ENST00000449264 RBPJQ06330 500 aa13□□□□□ -0.33
TNF-208ENST00000449264 CDK5R2Q13319 367 aa13□□□□□ -0.33
TNF-208ENST00000449264 SMN1Q16637 294 aaKnown RBP13□□□□□ -0.33
TNF-208ENST00000449264 ZNF362Q5T0B9 420 aaPredicted RBP13□□□□□ -0.33
TNF-208ENST00000449264 C1orf185Q5T7R7 199 aa13□□□□□ -0.33
TNF-208ENST00000449264 FAM205BPQ63HN1 556 aa13□□□□□ -0.33
TNF-208ENST00000449264 NHLRC1Q6VVB1 395 aa13□□□□□ -0.33
TNF-208ENST00000449264 ZC3HAV1Q7Z2W4 902 aaKnown RBP13□□□□□ -0.33
TNF-208ENST00000449264 HDDC2Q7Z4H3 204 aa13□□□□□ -0.33
TNF-208ENST00000449264 ADCK1Q86TW2 530 aa13□□□□□ -0.33
TNF-208ENST00000449264 TUSC5Q8IXB3 177 aa13□□□□□ -0.33
TNF-208ENST00000449264 GCNT2Q8N0V5 402 aa13□□□□□ -0.33
TNF-208ENST00000449264 ZNF786Q8N393 782 aa13□□□□□ -0.33
TNF-208ENST00000449264 ZIC4Q8N9L1 334 aa13□□□□□ -0.33
TNF-208ENST00000449264 NPEPL1Q8NDH3 523 aa13□□□□□ -0.33
TNF-208ENST00000449264 HCAR1Q9BXC0 346 aa13□□□□□ -0.33
TNF-208ENST00000449264 SYT4Q9H2B2 425 aa13□□□□□ -0.33
TNF-208ENST00000449264 RERGLQ9H628 205 aa13□□□□□ -0.33
TNF-208ENST00000449264 CLN6Q9NWW5 311 aa13□□□□□ -0.33
TNF-208ENST00000449264 FREM1Q5H8C1 2179 aa12.99□□□□□ -0.33
TNF-208ENST00000449264 IGKV3D-15A0A087WSY6 115 aa12.99□□□□□ -0.33
TNF-208ENST00000449264 PRSS37A4D1T9 235 aa12.99□□□□□ -0.33
TNF-208ENST00000449264 GPR171O14626 319 aa12.99□□□□□ -0.33
TNF-208ENST00000449264 ENTPD6O75354 484 aa12.99□□□□□ -0.33
TNF-208ENST00000449264 TRMUO75648 421 aaKnown RBP12.99□□□□□ -0.33
TNF-208ENST00000449264 IGHG1P01857 330 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms