RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 SMIM11AP58511 58 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 BNIP1Q12981 228 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 SEC23BQ15437 767 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 ALG10Q5BKT4 473 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 NCMAPQ5T1S8 102 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 KLHL24Q6TFL4 600 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 OAFQ86UD1 273 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 IGFN1Q86VF2 1251 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 OR6X1Q8NH79 312 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 ASB9Q96DX5 294 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 ADAD1Q96M93 576 aaKnown RBP16.36■□□□□ 0.21
SHH-204ENST00000441114 TNFRSF13CQ96RJ3 184 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 ULBP2Q9BZM5 246 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 ESRP2Q9H6T0 727 aaKnown RBP16.36■□□□□ 0.21
SHH-204ENST00000441114 IL1RAPQ9NPH3 570 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 NPAP1Q9NZP6 1156 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 PLEKHA6Q9Y2H5 1048 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 AMDHD2Q9Y303 409 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 ALPK2Q86TB3 2170 aa16.36■□□□□ 0.21
SHH-204ENST00000441114 DPRXA6NFQ7 191 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 RPL36A-HNRNPH2H7BZ11 118 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 M0R1B8 84 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 DNAJC8O75937 253 aaPredicted RBP16.35■□□□□ 0.21
SHH-204ENST00000441114 CD3EP07766 207 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 PRPS1P60891 318 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 TUBA1BP68363 451 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 TUBA4AP68366 448 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 BSPH1Q075Z2 132 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 TOP3AQ13472 1001 aaPredicted RBP16.35■□□□□ 0.21
SHH-204ENST00000441114 TBRG1Q3YBR2 411 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 SEZ6L2Q6UXD5 910 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 ZNF704Q6ZNC4 412 aaPredicted RBP16.35■□□□□ 0.21
SHH-204ENST00000441114 TUBA1AQ71U36 451 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 C17orf78Q8N4C9 275 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 OR4K5Q8NGD3 323 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 BCL2L2Q92843 193 aaPredicted RBP16.35■□□□□ 0.21
SHH-204ENST00000441114 ZNF566Q969W8 418 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 LRR1Q96L50 414 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 ZNF347Q96SE7 839 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 ST6GALNAC2Q9UJ37 374 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 AURKCQ9UQB9 309 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 TMEM5Q9Y2B1 443 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 POFUT2Q9Y2G5 429 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 HIF3AQ9Y2N7 669 aa16.35■□□□□ 0.21
SHH-204ENST00000441114 ABCA4P78363 2273 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 CDC42EP2O14613 210 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 TSPAN19P0C672 248 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 CLRN1P58418 232 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 CTXN1P60606 82 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 UBE2NP61088 152 aaKnown RBP16.34■□□□□ 0.21
SHH-204ENST00000441114 MYBPC1Q00872 1141 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 CHRNB3Q05901 458 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 TRAP1Q12931 704 aaKnown RBP16.34■□□□□ 0.21
SHH-204ENST00000441114 ACKR1Q16570 336 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 ANKRD16Q6P6B7 361 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 TMPRSS11FQ6ZWK6 438 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 ASB10Q8WXI3 467 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 TMEM54Q969K7 222 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 SLC25A44Q96H78 314 aaPredicted RBP16.34■□□□□ 0.21
SHH-204ENST00000441114 DHRS1Q96LJ7 313 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 ALPK1Q96QP1 1244 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 TRIM15Q9C019 465 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 GLTPQ9NZD2 209 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 TMCC3Q9ULS5 477 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 RNF115Q9Y4L5 304 aa16.34■□□□□ 0.21
SHH-204ENST00000441114 HRNRQ86YZ3 2850 aaPredicted RBP16.34■□□□□ 0.21
SHH-204ENST00000441114 SH3PXD2BA1X283 911 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 ACOT8O14734 319 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 GSC2O15499 205 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 WNT11O96014 354 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 RPL4P36578 427 aaKnown RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 OMPP47874 163 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 SLC9A3P48764 834 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 DAP3P51398 398 aaKnown RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 SH3BGRP55822 239 aaPredicted RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 RUNX1T1Q06455 604 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 KEAP1Q14145 624 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 ZBED5Q49AG3 693 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 FAM98BQ52LJ0 330 aaKnown RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 PGM2L1Q6PCE3 622 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 KLHL17Q6TDP4 642 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 PIWIL3Q7Z3Z3 882 aaKnown RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 SYT14Q8NB59 555 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 CADM1Q9BY67 442 aaKnown RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 KRCC1Q9NPI7 259 aaPredicted RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 ZNF346Q9UL40 294 aaKnown RBP16.33■□□□□ 0.2
SHH-204ENST00000441114 EDARQ9UNE0 448 aa16.33■□□□□ 0.2
SHH-204ENST00000441114 PDZD2O15018 2839 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 ZNF99A8MXY4 864 aaPredicted RBP16.32■□□□□ 0.2
SHH-204ENST00000441114 OR10H3O60404 316 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 TRMUO75648 421 aaKnown RBP16.32■□□□□ 0.2
SHH-204ENST00000441114 IGHG1P01857 330 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 PGA4P0DJD7 388 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 PGA3P0DJD8 388 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 ACADSP16219 412 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 DNASE1P24855 282 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 ACVR1BP36896 505 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 CAPZA2P47755 286 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 ERFP50548 548 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 IST1P53990 364 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms