RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 GABRG1Q8N1C3 465 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 LRRC25Q8N386 305 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 OR4A4PQ8NGN8 299 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 OR1J4Q8NGS1 313 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 OR1J2Q8NGS2 313 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 PPP1R1CQ8WVI7 109 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 SEC11CQ9BY50 192 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 XKR8Q9H6D3 395 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 TMEM100Q9NV29 134 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 UPB1Q9UBR1 384 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 FBXO4Q9UKT5 387 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ADAM18Q9Y3Q7 739 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 TRAV18A0A075B6X5 111 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 YKT6O15498 198 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 FADS1O60427 444 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 EIF1BO60739 113 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 RDH16O75452 317 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 UPK3AO75631 287 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 MAS1P04201 325 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ANXA2P07355 339 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 ABOP16442 354 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 EIF1P41567 113 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 TSFMP43897 325 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 HAAOP46952 286 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ATP1B3P54709 279 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 SNRPEP62304 92 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 SSBP1Q04837 148 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 ECH1Q13011 328 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 DHRS2Q13268 280 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 HABP2Q14520 560 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 ATXN7L3Q14CW9 347 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 TAF13Q15543 124 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 INPP5JQ15735 1006 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 FAM109BQ6ICB4 259 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 RBMS3Q6XE24 437 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 OR6K6Q8NGW6 343 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ELP5Q8TE02 316 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 GPX8Q8TED1 209 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 CCDC74AQ96AQ1 378 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 COX14Q96I36 57 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 NMNAT3Q96T66 252 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 MNTQ99583 582 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 SLC25A21Q9BQT8 299 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 NMNAT2Q9BZQ4 307 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 RNF122Q9H9V4 155 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ACKR4Q9NPB9 350 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 COMMD9Q9P000 198 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 FRRS1LQ9P0K9 344 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 MBD2Q9UBB5 411 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 YBX2Q9Y2T7 364 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 A0A1B0GWA3 101 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 F5H0A9 414 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 SNRNP200O75643 2136 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 NDUFB2O95178 105 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 S100A8P05109 93 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 FOLR2P14207 255 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 NFYBP25208 207 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 PRSS3P35030 304 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 SREBF2Q12772 1141 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ALKBH1Q13686 389 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 SLC35D3Q5M8T2 416 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 EXOSC6Q5RKV6 272 aaKnown RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 ATPAF1Q5TC12 328 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 LINC01590Q5TEZ4 76 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ZNF704Q6ZNC4 412 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 OR51D1Q8NGF3 324 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 OR5AP2Q8NGF4 316 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 OR5AK2Q8NH90 309 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 LGR4Q9BXB1 951 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 TMEM27Q9HBJ8 222 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 CXXC1Q9P0U4 656 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 ENTPD2Q9Y5L3 495 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 EML5Q05BV3 1969 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 TRBV5-7A0A0A0MS05 114 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 A0A1B0GVT2 93 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 COLCA2A8K830 154 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 CCSO14618 274 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 SCAMP1O15126 338 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 SMAD9O15198 467 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 OR2T1O43869 369 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 RPP14O95059 124 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 OR8G3PP0DMU2 310 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 PRKAR2AP13861 404 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 CFPP27918 469 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 PSMD4P55036 377 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 MLF2Q15773 248 aaPredicted RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 LY6G5CQ5SRR4 150 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 GTPBP8Q8N3Z3 284 aaPredicted RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 STOML3Q8TAV4 291 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 CD99L2Q8TCZ2 262 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 TCEAL3Q969E4 200 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 ARL11Q969Q4 196 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 ARRDC3Q96B67 414 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 SEC22AQ96IW7 307 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 EDEM2Q9BV94 578 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 POTEKPQ9BYX7 375 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 MRPS30Q9NP92 439 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 SPHK2Q9NRA0 654 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 DHCR7Q9UBM7 475 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms