RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ZC3HAV1LQ96H79 300 aaKnown RBP12.89□□□□□ -0.35
LIMS1-206ENST00000414829 RSRC1Q96IZ7 334 aaKnown RBP12.89□□□□□ -0.35
LIMS1-206ENST00000414829 MUS81Q96NY9 551 aa12.89□□□□□ -0.35
LIMS1-206ENST00000414829 POLDIP3Q9BY77 421 aaKnown RBP12.89□□□□□ -0.35
LIMS1-206ENST00000414829 MED29Q9NX70 200 aa12.89□□□□□ -0.35
LIMS1-206ENST00000414829 ZNF99A8MXY4 864 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-206ENST00000414829 TNFRSF11BO00300 401 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 IGHMP01871 453 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 HLA-DOBP13765 273 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 MAKP20794 623 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 FPR3P25089 353 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 RPL4P36578 427 aaKnown RBP12.88□□□□□ -0.35
LIMS1-206ENST00000414829 OMPP47874 163 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 LIMS1P48059 325 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 HMGA2P52926 109 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 CLRN1P58418 232 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 UBE2NP61088 152 aaKnown RBP12.88□□□□□ -0.35
LIMS1-206ENST00000414829 TAB1Q15750 504 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 ZBED5Q49AG3 693 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 C1orf146Q5VVC0 180 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 OR2T5Q6IEZ7 315 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 RPL13AP3Q6NVV1 102 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 WFDC8Q8IUA0 241 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 ADGRG5Q8IZF4 528 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 NOXO1Q8NFA2 376 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 OR13C2Q8NGS9 318 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 OR2T29Q8NH02 315 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 NANOS1Q8WY41 292 aaKnown RBP12.88□□□□□ -0.35
LIMS1-206ENST00000414829 FAM46AQ96IP4 442 aaKnown RBP12.88□□□□□ -0.35
LIMS1-206ENST00000414829 FUZQ9BT04 418 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 TXNIPQ9H3M7 391 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 CRLF2Q9HC73 371 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 SLC7A8Q9UHI5 535 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 SAMHD1Q9Y3Z3 626 aaKnown RBP12.88□□□□□ -0.35
LIMS1-206ENST00000414829 HCFC1P51610 2035 aa12.88□□□□□ -0.35
LIMS1-206ENST00000414829 PKDREJQ9NTG1 2253 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 M0R3G1 203 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 MGRN1O60291 552 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 UPK3AO75631 287 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 NDUFB2O95178 105 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 HRGP04196 525 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 F13BP05160 661 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 PRF1P14222 555 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 GABRA6Q16445 453 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 ACKR1Q16570 336 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 NRN1LQ496H8 165 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 CARD17Q5XLA6 110 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 GPR139Q6DWJ6 353 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 TBPL2Q6SJ96 375 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 TMEM108Q6UXF1 575 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 OR1K1Q8NGR3 316 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 OR51A7Q8NH64 312 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 ASB10Q8WXI3 467 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 RADILQ96JH8 1075 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 ALG12Q9BV10 488 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 EMC6Q9BV81 110 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 CHID1Q9BWS9 393 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 SMURF2Q9HAU4 748 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 GPR35Q9HC97 309 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 SLC17A5Q9NRA2 495 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 GLTPQ9NZD2 209 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 MGAT4BQ9UQ53 548 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 POFUT2Q9Y2G5 429 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 LYVE1Q9Y5Y7 322 aa12.87□□□□□ -0.35
LIMS1-206ENST00000414829 TRAV27A0A087WT01 109 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 ARPC4-TTLL3A0A0A6YYG9 625 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-206ENST00000414829 TCRBV3S1A0A5B6 114 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 ARRDC5A6NEK1 342 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 UNC119BA6NIH7 251 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 DEFB108AA8MXU0 73 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 XKRYO14609 159 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 GNGT2O14610 69 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 AHCYL1O43865 530 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CCNB2O95067 398 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CST1P01037 141 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 THBDP07204 575 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CD14P08571 375 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 PGA4P0DJD7 388 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 PGA3P0DJD8 388 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CDH2P19022 906 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-206ENST00000414829 ZNF84P51523 738 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CTXN1P60606 82 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 RPL27P61353 136 aaKnown RBP12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CAMK2DQ13557 499 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 MELKQ14680 651 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 TSC22D1Q15714 1073 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CEACAM16Q2WEN9 425 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 NHLRC1Q6VVB1 395 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 DPPA2Q7Z7J5 298 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 C10orf67Q8IYJ2 551 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 MOSPD2Q8NHP6 518 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 FANK1Q8TC84 345 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 GNPDA2Q8TDQ7 276 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CANT1Q8WVQ1 401 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 TMEM54Q969K7 222 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 PIK3IP1Q96FE7 263 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 TXNDC15Q96J42 360 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 LURAP1Q96LR2 239 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 GPX7Q96SL4 187 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms