RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 HPGDP15428 266 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PRPS1L1P21108 318 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PTGER4P35408 488 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 FBXW4P57775 412 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CSNK2A1P68400 391 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 HSPB3Q12988 150 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 MRPL28Q13084 256 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 CEBPEQ15744 281 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CTF1Q16619 201 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 HYAL4Q2M3T9 481 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 TRMT12Q53H54 448 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 CPTPQ5TA50 214 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 TMEM107Q6UX40 140 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 Q6ZPB1 254 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 CCDC190Q86UF4 302 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 SIAH3Q8IW03 269 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PM20D2Q8IYS1 436 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ARHGAP24Q8N264 748 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ZNF441Q8N8Z8 693 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 RBM15BQ8NDT2 890 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 CSNK2A3Q8NEV1 391 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 SPPL2AQ8TCT8 520 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 DOK4Q8TEW6 326 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PHF10Q8WUB8 498 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 ADIPOR1Q96A54 375 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 MOAP1Q96BY2 351 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 C11orf24Q96F05 449 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 NSL1Q96IY1 281 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 RILPQ96NA2 401 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 COL21A1Q96P44 957 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 BTBD9Q96Q07 612 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 NXF5Q9H1B4 397 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 MMADHCQ9H3L0 296 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 FOLH1BQ9HBA9 442 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 FANCFQ9NPI8 374 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 BAIAP2L1Q9UHR4 511 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ZNF639Q9UID6 485 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 SPTBN1Q01082 2364 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 POLEQ07864 2286 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 IGLV5-52A0A0A0MRZ9 124 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 FAM25EA8MYX2 175 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 SCAMP2O15127 329 aaKnown RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 TO15178 435 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ZG16O60844 167 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 WDR1O75083 606 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CBR3O75828 277 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PDE9AO76083 593 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 NADKO95544 446 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 ABCB1P08183 1280 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 T-ENOLP0DO92 83 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 BCKDHAP12694 445 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ATP6V1B1P15313 513 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 SDC1P18827 310 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 S1PR1P21453 382 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CASP3P42574 277 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 MAGEA5P43359 124 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 EMDP50402 254 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 TPD52P55327 224 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 EMX2Q04743 252 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 RUNX1T1Q06455 604 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 UBE2V1Q13404 147 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ART3Q13508 389 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 KIAA0040Q15053 153 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 LTB4RQ15722 352 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 NNATQ16517 81 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 C3AR1Q16581 482 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 RFTN2Q52LD8 501 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 CMPK2Q5EBM0 449 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 C6orf136Q5SQH8 315 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 IL23RQ5VWK5 629 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ZCCHC12Q6PEW1 402 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 Q6ZSR9 355 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ODF3L1Q8IXM7 274 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PRR22Q8IZ63 422 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 TMEM251Q8N6I4 163 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CDRT4Q8N9R6 151 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 GPR151Q8TDV0 419 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CA5BP1Q8WTZ4 195 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 UCN3Q969E3 161 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 TMBIM1Q969X1 311 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 AMDHD1Q96NU7 426 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 MS4A4EQ96PG1 132 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ZBTB18Q99592 522 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 BTBD10Q9BSF8 475 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ANGPTL4Q9BY76 406 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 GLIPR2Q9H4G4 154 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 PTGES2Q9H7Z7 377 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ZDHHC11Q9H8X9 412 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 ACKR4Q9NPB9 350 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 DEPPQ9NTK1 212 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CRNNQ9UBG3 495 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 ZDHHC2Q9UIJ5 367 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 FAF1Q9UNN5 650 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 ZNF835Q9Y2P0 537 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 MEMO1Q9Y316 297 aa5.64□□□□□ -1.51
USP40-202ENST00000409945 CHCHD2Q9Y6H1 151 aaPredicted RBP5.64□□□□□ -1.51
USP40-202ENST00000409945 DOPEY2Q9Y3R5 2298 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 PTPN13Q12923 2485 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 HIVEP3Q5T1R4 2406 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 C15orf38-AP3S2A0A0A6YYH1 394 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms