RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 F3P13726 295 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF25P17030 456 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 EN2P19622 333 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 OPRD1P41143 372 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 NR0B1P51843 470 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MAT1AQ00266 395 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MAPK14Q16539 360 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 OR9A4Q8NGU2 314 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SDF2Q99470 211 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 PAPOLGQ9BWT3 736 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 EMC7Q9NPA0 242 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 GHRLQ9UBU3 117 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SERGEFQ9UGK8 458 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 LSM2Q9Y333 95 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MN1Q10571 1320 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 LINC01553A4QN01 128 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 HNRNPA1P09651 372 aaKnown RBP eCLIP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 UBCP0CG48 685 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 HOXB2P14652 356 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 HOXB9P17482 250 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 PSMB1P20618 241 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 DLSTP36957 453 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 RAD52P43351 418 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MTNR1BP49286 362 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ART1P52961 327 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 VAMP2P63027 116 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SIRPAP78324 504 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SNTB1Q13884 538 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 RPE65Q16518 533 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SLC22A10Q63ZE4 541 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 RNF165Q6ZSG1 346 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 CSNK1A1LQ8N752 337 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 DUSP19Q8WTR2 217 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 CCDC107Q8WV48 283 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MOAP1Q96BY2 351 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SENP5Q96HI0 755 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MRGPRX3Q96LB0 322 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 WDFY2Q96P53 400 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 FGF22Q9HCT0 170 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 Q9N2J8 555 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 GRHPRQ9UBQ7 328 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 PUS1Q9Y606 427 aaKnown RBP eCLIP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MED12Q93074 2177 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 LOC102724200A0A096LPH7 203 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 CLDN4O14493 209 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 PPP1R2P9O14990 202 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 UBBP0CG47 229 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ATF1P18846 271 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 LBX1P52954 281 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 RUNX3Q13761 415 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ARHGAP19Q14CB8 494 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 NIPAL3Q6P499 406 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF619Q8N2I2 560 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 OR52N1Q8NH53 320 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 FAM46BQ96A09 425 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MMABQ96EY8 250 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 THOC3Q96J01 351 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 C5orf34Q96MH7 638 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 TOLLIPQ9H0E2 274 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 RXFP3Q9NSD7 469 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF230Q9UIE0 474 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 A0A1B0GTH9 108 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 HCRTR2O43614 444 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 DPM1O60762 260 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 FBXO24O75426 580 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 NDUFB2O95178 105 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 MAJINQ3KP22 176 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 SFRP5Q5T4F7 317 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 OR5M10Q6IEU7 315 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 PRSS41Q7RTY9 318 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 OR10D4PQ8NGN7 298 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 Q96M85 177 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 LRRC3BQ96PB8 259 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 ASB6Q9NWX5 421 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 UPB1Q9UBR1 384 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF629Q9UEG4 869 aaPredicted RBP10.97□□□□□ -0.65
HMGB1-206ENST00000405805 KCND3Q9UK17 655 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 PPIL1Q9Y3C6 166 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 DOCK4Q8N1I0 1966 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 BRINP1O60477 761 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 WNT1P04628 370 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 TACSTD2P09758 323 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 HIST1H1CP16403 213 aaKnown RBP10.97□□□□□ -0.65
HMGB1-206ENST00000405805 PSMA3P25788 255 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 DCTDP32321 178 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 ALDH3B1P43353 468 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 DECR1Q16698 335 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 MORN4Q8NDC4 146 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 SLC22A18Q96BI1 424 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 C20orf85Q9H1P6 137 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 FGF20Q9NP95 211 aaPredicted RBP10.97□□□□□ -0.65
HMGB1-206ENST00000405805 SMCO4Q9NRQ5 59 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 MAN2C1Q9NTJ4 1040 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 ZFP57Q9NU63 452 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 CKLFQ9UBR5 152 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 ICKQ9UPZ9 632 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 CHD5Q8TDI0 1954 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 GATCO43716 136 aaKnown RBP10.97□□□□□ -0.65
HMGB1-206ENST00000405805 IGFBP4P22692 258 aa10.97□□□□□ -0.65
HMGB1-206ENST00000405805 RBMS1P29558 406 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms