RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MPTX1A8MV57 137 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 K7EPK0 472 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 FOXE1O00358 373 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 DOK2O60496 412 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 YIF1AO95070 293 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SEMG1P04279 462 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 QDPRP09417 244 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 RNH1P13489 461 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 NPPBP16860 134 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 AMY2BP19961 511 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 PRPH2P23942 346 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 PSMB5P28074 263 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 CLDN6P56747 220 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SIM1P81133 766 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ITPRIPL2Q3MIP1 535 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 FIP1L1Q6UN15 594 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF761Q86XN6 746 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 KLHDC8AQ8IYD2 350 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 GABRG1Q8N1C3 465 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 FAM71E2Q8N5Q1 922 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 OR4D11Q8NGI4 311 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 RERGQ96A58 199 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 TM4SF18Q96CE8 201 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 HHIPL1Q96JK4 782 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 LUZP4Q9P127 313 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SF3B6Q9Y3B4 125 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ADAMTSL3P82987 1691 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 PRAMEF25A6NGN4 478 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 CHRM4P08173 479 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ACAA1P09110 424 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 RAE1P78406 368 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 CDK5R1Q15078 307 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 RNF180Q86T96 592 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 OR5K2Q8NHB8 316 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 RBM18Q96H35 190 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 FAM212BQ9NTI7 297 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF701Q9NV72 531 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 KLHL42Q9P2K6 505 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 H7C417 338 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF354AO60765 605 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 LRP3O75074 770 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SCGB1D1O95968 90 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 KLKB1P03952 638 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CD70P32970 193 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SGCGQ13326 291 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 MEF2DQ14814 521 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF792Q3KQV3 632 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 LPCAT3Q6P1A2 487 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 HSD11B1LQ7Z5J1 315 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 DEFB128Q7Z7B8 93 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 PCSK9Q8NBP7 692 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 HSD17B11Q8NBQ5 300 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 FAM213BQ8TBF2 198 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 FAM3DQ96BQ1 224 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ESRP2Q9H6T0 727 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 DHCR7Q9UBM7 475 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CHD5Q8TDI0 1954 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF587BE7ETH6 402 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 PLPP1O14494 284 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 NDUFA2O43678 99 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 FCMRO60667 390 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 STK17BO94768 372 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SCAF4O95104 1147 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 KAT7O95251 611 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 C1orf105O95561 183 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 NFATC1O95644 943 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CASRP41180 1078 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CTSOP43234 321 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 PCBP3P57721 371 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ARF3P61204 181 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ARF1P84077 181 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ELFN2Q5R3F8 820 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 OR2A2Q6IF42 318 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ARMC6Q6NXE6 501 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 USP53Q70EK8 1073 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 GALNT16Q8N428 558 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 LINC01465Q8N7H1 131 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 OR5T1Q8NG75 326 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 OR4K14Q8NGD5 310 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 KIRREL1Q96J84 757 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF514Q96K75 400 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SPSB2Q99619 263 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CDC6Q99741 560 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 NCDNQ9UBB6 729 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 NEUROG3Q9Y4Z2 214 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SDK1Q7Z5N4 2213 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SCN9AQ15858 1988 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 KCNE1BA0A087WTH5 132 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 PLPP2O43688 288 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 RPLP2P05387 115 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CMPK1P30085 196 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CTXN1P60606 82 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SHC2P98077 582 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 RNLSQ5VYX0 342 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 OR7E24Q6IFN5 339 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SLC16A9Q7RTY1 509 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 OR51Q1Q8NH59 317 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 SECTM1Q8WVN6 248 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 EID2BQ96D98 161 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 LMLNQ96KR4 655 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms