RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 OR5D14Q8NGL3 314 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR13C4Q8NGS5 318 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GNPDA2Q8TDQ7 276 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MS4A7Q9GZW8 240 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GSN-AS1Q9NRJ2 163 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FLRT1Q9NZU1 646 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM235A6NFC5 223 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DHRS7CA6NNS2 312 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 INSIG1O15503 277 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FZD6O60353 706 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF735P0CB33 412 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PRSS56P0CW18 603 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MEOX2P50222 304 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 BPIFB3P59826 476 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PRDX4Q13162 271 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PARP15Q460N3 678 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MANEALQ5VSG8 457 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FAM57BQ71RH2 274 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SLC30A7Q8NEW0 376 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GPR88Q9GZN0 384 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 LRRC19Q9H756 370 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SLC25A22Q9H936 323 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 COA4Q9NYJ1 87 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF587BE7ETH6 402 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TULP2O00295 520 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SLC16A6O15403 523 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ENTPD3O75355 529 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PITX3O75364 302 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GSCP56915 257 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 IL13RA1P78552 427 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 HTR4Q13639 388 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 IZUMO4Q1ZYL8 232 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PM20D2Q8IYS1 436 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MFSD4AQ8N468 514 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ENDOVQ8N8Q3 282 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 NEIL3Q8TAT5 605 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SFXN5Q8TD22 340 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 C11orf40Q8WZ69 217 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TFAP2CQ92754 450 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF714Q96N38 554 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 BIRC8Q96P09 236 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR7D2Q96RA2 312 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR52A5Q9H2C5 316 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 THUMPD1Q9NXG2 353 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 KCNG2Q9UJ96 466 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ATP7BP35670 1465 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ALOX12BO75342 701 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 IL2RAP01589 272 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 RPL5P46777 297 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GPR12P47775 334 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 LGALS7P47929 136 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 VASPP50552 380 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 RAB9AP51151 201 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 WNT3AP56704 352 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CYCSP99999 105 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 HAGHQ16775 308 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DEFB134Q4QY38 66 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 LIAT1Q6ZQX7 453 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 C17orf78Q8N4C9 275 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CHAC2Q8WUX2 184 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 UTP4Q969X6 686 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 HMCESQ96FZ2 354 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 HSD17B10Q99714 261 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 RAXQ9Y2V3 346 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM14AQ9Y6G1 99 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZDBF2Q9HCK1 2354 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FEZF1A0PJY2 475 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR6C75A6NL08 312 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DPM1O60762 260 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 POP7O75817 140 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 KCNK2O95069 426 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ENGP17813 658 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 POU3F3P20264 500 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 M6PRP20645 277 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MALP21145 153 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TAGLN2P37802 199 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 STC1P52823 247 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TIGITQ495A1 244 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 BCL7AQ4VC05 210 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 STUMQ69YW2 141 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 KLHDC10Q6PID8 442 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MDGA2Q7Z553 956 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MFSD6LQ8IWD5 586 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SVBPQ8N300 66 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 POP5Q969H6 163 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 EAF1Q96JC9 268 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 NSUN5Q96P11 429 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 HOPXQ9BPY8 73 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM175Q9BSA9 504 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FAAP24Q9BTP7 215 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SARGQ9BW04 601 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DEFB127Q9H1M4 99 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FBXO34Q9NWN3 711 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 RCL1Q9Y2P8 373 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MRPS16Q9Y3D3 137 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ARPC5O15511 151 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ASGR2P07307 311 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FBP1P09467 338 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF688P0C7X2 276 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PCSK6P29122 969 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms