RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 FANK1Q8TC84 345 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 C14orf79Q96F83 325 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 USB1Q9BQ65 265 aaKnown RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 POLDIP3Q9BY77 421 aaKnown RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ULBP2Q9BZM5 246 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 UNC79Q9P2D8 2635 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 UNC119BA6NIH7 251 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 A6NNC1 897 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 PDLIM1O00151 329 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 FKBP6O75344 327 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 CCNB2O95067 398 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 IGHG1P01857 330 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 TSPAN19P0C672 248 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 FOXG1P55316 489 aaPredicted RBP13.06□□□□□ -0.32
COL9A1-204ENST00000370496 SH3BGRP55822 239 aaPredicted RBP13.06□□□□□ -0.32
COL9A1-204ENST00000370496 CLRN1P58418 232 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 LAPTM4AQ15012 233 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 ACKR1Q16570 336 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 ZBED5Q49AG3 693 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 OR7E24Q6IFN5 339 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 KLHL24Q6TFL4 600 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 ZNF295-AS1Q8N0V1 137 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 LINC00471Q8N535 108 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 C1orf162Q8NEQ5 155 aaPredicted RBP13.06□□□□□ -0.32
COL9A1-204ENST00000370496 NOXO1Q8NFA2 376 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 OR9Q2Q8NGE9 314 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 OR6X1Q8NH79 312 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 ASB10Q8WXI3 467 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 ZNF566Q969W8 418 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 MUCL1Q96DR8 90 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 TNFRSF13CQ96RJ3 184 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 VNN3Q9NY84 501 aa13.06□□□□□ -0.32
COL9A1-204ENST00000370496 STX18Q9P2W9 335 aaKnown RBP13.06□□□□□ -0.32
COL9A1-204ENST00000370496 NPIPB13A6NJU9 1138 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 OR5H1A6NKK0 313 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 NPIPB4C9JG80 1138 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 E2F6O75461 281 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 PRF1P14222 555 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 FPR3P25089 353 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 CTXN1P60606 82 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 PPP1R8Q12972 351 aaKnown RBP13.05□□□□□ -0.32
COL9A1-204ENST00000370496 PPA1Q15181 289 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 TAB1Q15750 504 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 TIMM23BQ5SRD1 257 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 LINGO2Q7L985 606 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 C20orf196Q8IYI0 205 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 C17orf78Q8N4C9 275 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 OR4C15Q8NGM1 316 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 HSD17B8Q92506 261 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 SLC25A44Q96H78 314 aaPredicted RBP13.05□□□□□ -0.32
COL9A1-204ENST00000370496 LRR1Q96L50 414 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 KATNB1Q9BVA0 655 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 CRLF2Q9HC73 371 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 GPR35Q9HC97 309 aa13.05□□□□□ -0.32
COL9A1-204ENST00000370496 SETXQ7Z333 2677 aaKnown RBP13.04□□□□□ -0.32
COL9A1-204ENST00000370496 NDUFB2O95178 105 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 GOSR1O95249 250 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 IGHMP01871 453 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 THBDP07204 575 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 PGA4P0DJD7 388 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 PGA3P0DJD8 388 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 CRYGSP22914 178 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 CCNIQ14094 377 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 GK3PQ14409 553 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 GABRA6Q16445 453 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 CEACAM16Q2WEN9 425 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 FAM205BPQ63HN1 556 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 PGBD2Q6P3X8 592 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 NHLRC1Q6VVB1 395 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 SSX8Q7RTT4 187 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 ZER1Q7Z7L7 766 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 P2RY8Q86VZ1 359 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 WDFY1Q8IWB7 410 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 OR1K1Q8NGR3 316 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 OR52N5Q8NH56 324 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 GNPDA2Q8TDQ7 276 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 UTP4Q969X6 686 aaKnown RBP13.04□□□□□ -0.32
COL9A1-204ENST00000370496 TSPAN32Q96QS1 320 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 TXNIPQ9H3M7 391 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 NGBQ9NPG2 151 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 CCM2LQ9NUG4 571 aaPredicted RBP13.04□□□□□ -0.32
COL9A1-204ENST00000370496 SIGLEC7Q9Y286 467 aa13.04□□□□□ -0.32
COL9A1-204ENST00000370496 ZNF99A8MXY4 864 aaPredicted RBP13.03□□□□□ -0.32
COL9A1-204ENST00000370496 KLF4O43474 513 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 SEC14L2O76054 403 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 CD14P08571 375 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 NR2C1P13056 603 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 ACADSP16219 412 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 HMGA2P52926 109 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 RPL27P61353 136 aaKnown RBP13.03□□□□□ -0.32
COL9A1-204ENST00000370496 CD47Q08722 323 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 FHL1Q13642 323 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 DAZAP2Q15038 168 aaPredicted RBP13.03□□□□□ -0.32
COL9A1-204ENST00000370496 HIKESHIQ53FT3 197 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 PHYHD1Q5SRE7 291 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 C1orf94Q6P1W5 598 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 SMARCD3Q6STE5 483 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 C22orf34Q6ZV56 151 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 SYT14Q8NB59 555 aa13.03□□□□□ -0.32
COL9A1-204ENST00000370496 AQP11Q8NBQ7 271 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms