RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ATP1B1P05026 303 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NPPBP16860 134 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 JUNBP17275 347 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 CDK2P24941 298 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TACR3P29371 465 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 BLVRBP30043 206 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 KIR2DL3P43628 341 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 EMP3P54852 163 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 EEF1A1P68104 462 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 BAMBIQ13145 260 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 GDF7Q7Z4P5 450 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 MARCH3Q86UD3 253 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TCEAL8Q8IYN2 117 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 OR10Z1Q8NGY1 313 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NANPQ8TBE9 248 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 OR14J1Q9UGF5 321 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NDRG4Q9ULP0 352 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 DIMT1Q9UNQ2 313 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 H0YGG7 62 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TP53I11O14683 189 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NME2P1O60361 137 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 GABRB1P18505 474 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 RAB4AP20338 218 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TLE1Q04724 770 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 DUSP6Q16828 381 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 C3orf38Q5JPI3 329 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TOR2AQ5JU69 321 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 ASTLQ6HA08 431 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 SLC25A46Q96AG3 418 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 FGGYQ96C11 551 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 PITHD1Q9GZP4 211 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 TSPAN10Q9H1Z9 355 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 UNKLQ9H9P5 680 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 NRIP3Q9NQ35 241 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NBASA2RRP1 2371 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 ATG2BQ96BY7 2078 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NOTCH3Q9UM47 2321 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 FAM221BA6H8Z2 402 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TMEM235A6NFC5 223 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 CTNSO60931 367 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 ETHE1O95571 254 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 SRMP19623 302 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 HTR2CP28335 458 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 PLA2G7Q13093 441 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 CTF1Q16619 201 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 AVPI1Q5T686 147 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 RPL22L1Q6P5R6 122 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 CORO6Q6QEF8 472 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 LCTLQ6UWM7 567 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TMUB2Q71RG4 321 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 CMTM1Q8IZ96 169 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 OR6V1Q8N148 313 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 KCNRGQ8N5I3 272 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 SLC30A7Q8NEW0 376 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 PIGTQ969N2 578 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 WBP2Q969T9 261 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 HOXD1Q9GZZ0 328 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NIPAL2Q9H841 368 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 ISG20L2Q9H9L3 353 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 SLC6A14Q9UN76 642 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 NME7Q9Y5B8 376 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 CD300LBA8K4G0 201 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 SHOXO15266 292 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 AK1P00568 194 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 UBE2IP63279 158 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 YBX1P67809 324 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 TAGLNQ01995 201 aaKnown RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 ACSM1Q08AH1 577 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 KCNAB1Q14722 419 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 ELOCQ15369 112 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 LRRTM1Q86UE6 522 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 SLC35F3Q8IY50 421 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 CHCHD4Q8N4Q1 142 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 IL22RA1Q8N6P7 574 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 BHLHE23Q8NDY6 225 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 RAB7BQ96AH8 199 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 TM4SF18Q96CE8 201 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 DERL3Q96Q80 235 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 APOOQ9BUR5 198 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 PLEKHB1Q9UF11 243 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 PCDHGA5Q9Y5G8 931 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 LRP6O75581 1613 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 DNAJC25-GNG10A0A024R161 153 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 SLC22A23A1A5C7 686 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 PLPP1O14494 284 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 CYB5BO43169 146 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 LALBAP00709 142 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 IGHV3-9P01782 118 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 C1QBP02746 253 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 CEBPBP17676 345 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 ITGB7P26010 798 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 DCTDP32321 178 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 OPRD1P41143 372 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 SFRP5Q5T4F7 317 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 LIPNQ5VXI9 398 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 NANOGP1Q8N7R0 232 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 NECAP1Q8NC96 275 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 MIB2Q96AX9 1013 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 MS4A4AQ96JQ5 239 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 AMDHD1Q96NU7 426 aa8.02□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms