RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 FN3KRPQ9HA64 309 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PURGQ9UJV8 347 aaKnown RBP11.68□□□□□ -0.54
SDC3-201ENST00000336798 LHX6Q9UPM6 363 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 TMEM82A0PJX8 343 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 FGF4P08620 206 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SLC35A1P78382 337 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 MFGE8Q08431 387 aaPredicted RBP11.68□□□□□ -0.54
SDC3-201ENST00000336798 PLPP7Q8NBV4 271 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SHARPINQ9H0F6 387 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PRSS16Q9NQE7 514 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SSUH2Q9Y2M2 353 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 GPR45Q9Y5Y3 372 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 LTN1O94822 1766 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SERINC4A6NH21 518 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 CD63P08962 238 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 PRDX1Q06830 199 aaKnown RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 OR2B11Q5JQS5 317 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ZNF595Q8IYB9 648 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 CMTM2Q8TAZ6 248 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 SLC19A3Q9BZV2 496 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 LHX3Q9UBR4 397 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 TMEM221A6NGB7 291 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 AGAP14A8MT82 685 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ZNF814B7Z6K7 855 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 PRAF2O60831 178 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 SHC1P29353 583 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ELLP55199 621 aaPredicted RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 SLC22A25Q6T423 547 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 SLC35G3Q8N808 338 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 OR56B4Q8NH76 319 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ASB11Q8WXH4 323 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ISG20Q96AZ6 181 aaKnown RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 FER1L6-AS2Q96M78 137 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 GMLQ99445 158 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 PIGQQ9BRB3 760 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 IGKV6-21A0A0C4DH24 114 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 hCG_1809904A0A1W2PP81 198 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 A0A1W2PPE2 198 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 A0A1W2PR64 198 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 A0A1W2PRV1 198 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 UBBP0CG47 229 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 UBCP0CG48 685 aaKnown RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 RAB11AP62491 216 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 GDPD3Q7L5L3 318 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 DEFB108BQ8NET1 73 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ABHD4Q8TB40 342 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 CCDC74BQ96LY2 380 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ZNF576Q9H609 170 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 CHST11Q9NPF2 352 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 C1orf123Q9NWV4 160 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 XRN1Q8IZH2 1706 aaKnown RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 CTDSP2O14595 271 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 SELENOFO60613 162 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 ZNF728P0DKX0 622 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 NFYAP23511 347 aaPredicted RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 OPRD1P41143 372 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 UBE2G2P60604 165 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 TBC1D28Q2M2D7 210 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 YRDCQ86U90 279 aaKnown RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 OR6T1Q8NGN1 323 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 PGAP3Q96FM1 320 aaPredicted RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 REEP6Q96HR9 211 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 FAM173AQ9BQD7 235 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 HEYLQ9NQ87 328 aaPredicted RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 GMPR2Q9P2T1 348 aaKnown RBP11.67□□□□□ -0.54
SDC3-201ENST00000336798 AKR7A3O95154 331 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 CPXM2Q8N436 756 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 OR1J2Q8NGS2 313 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 CACNA1FO60840 1977 aa11.67□□□□□ -0.54
SDC3-201ENST00000336798 LTBP3Q9NS15 1303 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 HCRTR1O43613 425 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 NUDT1P36639 197 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 RPS27AP62979 156 aaKnown RBP11.66□□□□□ -0.54
SDC3-201ENST00000336798 UBA52P62987 128 aaKnown RBP11.66□□□□□ -0.54
SDC3-201ENST00000336798 GPR176Q14439 515 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 TATDN3Q17R31 274 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 RTL6Q6ICC9 239 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 CBLL1Q75N03 491 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 OR56B1Q8NGI3 324 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 PBX4Q9BYU1 374 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 ADAM19Q9H013 955 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 PLK3Q9H4B4 646 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 FGF21Q9NSA1 209 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 SLC22A7Q9Y694 548 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 SERTM2A0A1B0GWG4 89 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 ALX3O95076 343 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 COX20Q5RI15 118 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 TRILQ7L0X0 811 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 BAGE3Q86Y29 109 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 BAGE2Q86Y30 109 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 VRK3Q8IV63 474 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 AMBRA1Q9C0C7 1298 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 INHBCP55103 352 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 P2RX3P56373 397 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 LRRC28Q86X40 367 aaPredicted RBP11.66□□□□□ -0.54
SDC3-201ENST00000336798 FAM71CQ8NEG0 241 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 BANF2Q9H503 90 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 ATP23Q9Y6H3 246 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 P2RX6O15547 441 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 SCO1O75880 301 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms