RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 OR6X1Q8NH79 312 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 C14orf79Q96F83 325 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 REEP1Q9H902 201 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 VNN3Q9NY84 501 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 SAMHD1Q9Y3Z3 626 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 UNC119BA6NIH7 251 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 FKBP6O75344 327 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 CST1P01037 141 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 HOXB6P17509 224 aaKnown RBP13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 IFNGR2P38484 337 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 CSNK1A1P48729 337 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 DAP3P51398 398 aaKnown RBP13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 TGFBR3Q03167 851 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 TOP3AQ13472 1001 aaPredicted RBP13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 GABRA6Q16445 453 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 ACKR1Q16570 336 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 ANKDD1AQ495B1 522 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 PHYHD1Q5SRE7 291 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 ZER1Q7Z7L7 766 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 TMEM200AQ86VY9 491 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 OR4C15Q8NGM1 316 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 UTP4Q969X6 686 aaKnown RBP13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 GPA33Q99795 319 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 CRLF2Q9HC73 371 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 GPR35Q9HC97 309 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 B3GAT2Q9NPZ5 323 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 U3KQV3 271 aa13.98□□□□□ -0.17
CCDC28A-201ENST00000332797 CCNB2O95067 398 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 CRYGSP22914 178 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 RPL4P36578 427 aaKnown RBP13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 HMGA2P52926 109 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 CTXN1P60606 82 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 PRPS1P60891 318 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 DAZAP2Q15038 168 aaPredicted RBP13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 TAB1Q15750 504 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 FBXW10Q5XX13 1052 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 OR7E24Q6IFN5 339 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 HDDC2Q7Z4H3 204 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 LRRC75AQ8NAA5 344 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 OR9Q2Q8NGE9 314 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 ASB10Q8WXI3 467 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 HSD17B8Q92506 261 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 ZNF566Q969W8 418 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 SLCO4A1Q96BD0 722 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 SLC25A44Q96H78 314 aaPredicted RBP13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 LRR1Q96L50 414 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 USB1Q9BQ65 265 aaKnown RBP13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 ULBP2Q9BZM5 246 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 NDEL1Q9GZM8 345 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 YY1AP1Q9H869 796 aa13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 CCM2LQ9NUG4 571 aaPredicted RBP13.97□□□□□ -0.17
CCDC28A-201ENST00000332797 FBN2P35556 2912 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 OR5H1A6NKK0 313 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 RPL36A-HNRNPH2H7BZ11 118 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 GNGT2O14610 69 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 KLF4O43474 513 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 IGHG1P01857 330 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 FPR3P25089 353 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 CLRN1P58418 232 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 CCNIQ14094 377 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 PPA1Q15181 289 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 TAF11Q15544 211 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 CEACAM16Q2WEN9 425 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 TIMM23BQ5SRD1 257 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 PGBD2Q6P3X8 592 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 LINC00471Q8N535 108 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 C1orf162Q8NEQ5 155 aaPredicted RBP13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 OR52N5Q8NH56 324 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 GNPDA2Q8TDQ7 276 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 MUCL1Q96DR8 90 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 KATNB1Q9BVA0 655 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 POLDIP3Q9BY77 421 aaKnown RBP13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 TXNIPQ9H3M7 391 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 SIGLEC7Q9Y286 467 aa13.96□□□□□ -0.17
CCDC28A-201ENST00000332797 A0A1W2PR80 420 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 NPIPB13A6NJU9 1138 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 NPIPB4C9JG80 1138 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 PTP4A3O75365 173 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 NDUFB2O95178 105 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 IGHMP01871 453 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 PGA4P0DJD7 388 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 PGA3P0DJD8 388 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF26P17031 533 aaPredicted RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 HOXC12P31275 282 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 SH3BGRP55822 239 aaPredicted RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 RPL27P61353 136 aaKnown RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 ERVK-25P63136 954 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 ARF1P84077 181 aaKnown RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 RUNX1T1Q06455 604 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 MICAQ29983 383 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 HIKESHIQ53FT3 197 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 ARMC4Q5T2S8 1044 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 C1orf94Q6P1W5 598 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 P2RY8Q86VZ1 359 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 SYT14Q8NB59 555 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 PAPD5Q8NDF8 572 aaKnown RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 NOXO1Q8NFA2 376 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 OR1K1Q8NGR3 316 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 FANK1Q8TC84 345 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 TMEM54Q969K7 222 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms