RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ZNF468Q5VIY5 522 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 LINGO4Q6UY18 593 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PRICKLE2Q7Z3G6 844 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 OR2Z1Q8NG97 314 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 OR6K2Q8NGY2 324 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 H1FXQ92522 213 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 NPAS1Q99742 590 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 FTCDNL1E5RQL4 147 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 FCGR2BP31994 310 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 FCGR2CP31995 323 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 OXLD1Q5BKU9 147 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 LHX8Q68G74 356 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 NPAS3Q8IXF0 933 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 BOD1L2Q8IYS8 172 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 OR1L4Q8NGR5 311 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 GNPDA2Q8TDQ7 276 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 MFRPQ9BY79 579 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 CDC42BPGQ6DT37 1551 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 SAMD9LQ8IVG5 1584 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 EFCAB6Q5THR3 1501 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 A0A1B0GTW7 788 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 HOXA3O43365 443 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 KLF7O75840 302 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 B3GAT3O94766 335 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 ORM1P02763 201 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 CD79AP11912 226 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 KIR2DL1P43626 348 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 KIR2DL2P43627 348 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 GALR1P47211 349 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 VEZF1Q14119 521 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 EXOSC7Q15024 291 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 GTDC1Q4AE62 458 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 LYPLAL1Q5VWZ2 237 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 OR8J2Q8NGG1 315 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 SECTM1Q8WVN6 248 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 TMEM125Q96AQ2 219 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 STARD4Q96DR4 205 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 CPB2Q96IY4 423 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PACRGQ96M98 296 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PKMYT1Q99640 499 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 TMEM8AQ9HCN3 771 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 HCFC1R1Q9NWW0 138 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 KCNK7Q9Y2U2 307 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 OR2T8A6NH00 312 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 USP17L10C9JJH3 530 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 GAPDHSO14556 408 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 UBE2L6O14933 153 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 GNRH1P01148 92 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 PRSS2P07478 247 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 GDF1P27539 372 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 HMGCLP35914 325 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 XCR1P46094 333 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CAMPP49913 170 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 MFGE8Q08431 387 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CST9Q5W186 159 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 IGDCC3Q8IVU1 814 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 NKX2-3Q8TAU0 364 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 VN1R17PQ8TDU5 208 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 KCNS1Q96KK3 526 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 THAP7Q9BT49 309 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SELENOIQ9C0D9 397 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 VCX2Q9H322 139 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF385DQ9H6B1 395 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 IGKV3OR2-268A0A0C4DH90 116 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 LRCH4O75427 683 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SPCS3P61009 180 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 FAM174BQ3ZCQ3 159 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC47A2Q86VL8 602 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CSNK1A1LQ8N752 337 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 ST6GALNAC3Q8NDV1 305 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 PHLDA1Q8WV24 401 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 KCNE4Q8WWG9 221 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 IER2Q9BTL4 223 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 DNPEPQ9ULA0 475 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 DIMT1Q9UNQ2 313 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 PNPLA6Q8IY17 1366 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 FOXO6A8MYZ6 492 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CAPN5O15484 640 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 OR4F21O95013 312 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF888P0CJ79 500 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 GABRA3P34903 492 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CD96P40200 585 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SGSHP51688 502 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 RPL32P62910 135 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 RELAQ04206 551 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SRSF6Q13247 344 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SPIN4Q56A73 249 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 FCRLBQ6BAA4 426 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 OR4F3Q6IEY1 312 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 MRPL54Q6P161 138 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 HS3ST5Q8IZT8 346 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 HGDQ93099 445 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CHFRQ96EP1 664 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 DTD2Q96FN9 168 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SFXN2Q96NB2 322 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 MBOAT4Q96T53 435 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SRD5A3Q9H8P0 318 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 AKTIPQ9H8T0 292 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 P2RX2Q9UBL9 471 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms