RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SLC19A3Q9BZV2 496 aa14.2□□□□□ -0.14
LSM1-201ENST00000311351 GRIP2Q9C0E4 1043 aa14.2□□□□□ -0.14
LSM1-201ENST00000311351 CBLN4Q9NTU7 201 aa14.2□□□□□ -0.14
LSM1-201ENST00000311351 TAS2R5Q9NYW4 299 aa14.2□□□□□ -0.14
LSM1-201ENST00000311351 CRNNQ9UBG3 495 aaPredicted RBP14.2□□□□□ -0.14
LSM1-201ENST00000311351 RIMS3Q9UJD0 308 aa14.2□□□□□ -0.14
LSM1-201ENST00000311351 ZNF229Q9UJW7 825 aa14.2□□□□□ -0.14
LSM1-201ENST00000311351 ZNF726A6NNF4 738 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 ZNF99A8MXY4 864 aaPredicted RBP14.19□□□□□ -0.14
LSM1-201ENST00000311351 RNF13O43567 381 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 PIP5K1CO60331 668 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 LY6G6DO95868 133 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 ASAH2BP0C7U1 165 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 DRD4P21917 467 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 FUT4P22083 530 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 CAPZA2P47755 286 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 GSK3BP49841 420 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 IDH3GP51553 393 aaPredicted RBP14.19□□□□□ -0.14
LSM1-201ENST00000311351 GYS2P54840 703 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 NPRL3Q12980 569 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 ZNF544Q6NX49 715 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 SLC35D2Q76EJ3 337 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 NANOGNBQ7Z5D8 188 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 VTCN1Q7Z7D3 282 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 OR6N1Q8NGY5 312 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 HS6ST2Q96MM7 605 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 ULBP2Q9BZM5 246 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 NSRP1Q9H0G5 558 aaKnown RBP14.19□□□□□ -0.14
LSM1-201ENST00000311351 MYLK2Q9H1R3 596 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 NOX3Q9HBY0 568 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 B3GAT2Q9NPZ5 323 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 C20orf141Q9NUB4 165 aa14.19□□□□□ -0.14
LSM1-201ENST00000311351 CXCR6O00574 342 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 IGKV3-15P01624 115 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 IGLV1-44P01699 117 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 MT-ND1P03886 318 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 B4GALT1P15291 398 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 CALCRP30988 508 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 LSP1P33241 339 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 CSNK1A1P48729 337 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 NAAAQ02083 359 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 ZP4Q12836 540 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 ZNF813Q6ZN06 617 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 MDP1Q86V88 176 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 MAPK1IP1LQ8NDC0 245 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 TMEM239Q8WW34 195 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 LRR1Q96L50 414 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 PRRC1Q96M27 445 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 KCNS3Q9BQ31 491 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 KATNB1Q9BVA0 655 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 POLR2J2Q9GZM3 115 aaKnown RBP14.18□□□□□ -0.14
LSM1-201ENST00000311351 POLR2J3Q9H1A7 115 aaKnown RBP14.18□□□□□ -0.14
LSM1-201ENST00000311351 EFCAB1Q9HAE3 211 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 AP3M1Q9Y2T2 418 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 SNX13Q9Y5W8 968 aa14.18□□□□□ -0.14
LSM1-201ENST00000311351 BLOC1S5-TXNDC5H3BN57 136 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 SNX3O60493 162 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 OR7A10O76100 309 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 ZNF682O95780 498 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HLA-HP01893 362 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 CRYAAP02489 173 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HIST1H2ABP04908 130 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HEXAP06865 529 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HOXB1P14653 301 aaPredicted RBP14.17□□□□□ -0.14
LSM1-201ENST00000311351 NCK1P16333 377 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HOXB4P17483 251 aaPredicted RBP14.17□□□□□ -0.14
LSM1-201ENST00000311351 FUT1P19526 365 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 RBM34P42696 430 aaKnown RBP14.17□□□□□ -0.14
LSM1-201ENST00000311351 YAP1P46937 504 aaKnown RBP14.17□□□□□ -0.14
LSM1-201ENST00000311351 SELENOWP63302 87 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 LSM11P83369 360 aaKnown RBP eCLIP14.17□□□□□ -0.14
LSM1-201ENST00000311351 RPL18Q07020 188 aaKnown RBP14.17□□□□□ -0.14
LSM1-201ENST00000311351 ETFDHQ16134 617 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HACD2Q6Y1H2 254 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HIST3H2AQ7L7L0 130 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HIST1H2ACQ93077 130 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 FBXO17Q96EF6 278 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 SGTBQ96EQ0 304 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 POM121Q96HA1 1249 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 HOPXQ9BPY8 73 aaPredicted RBP14.17□□□□□ -0.14
LSM1-201ENST00000311351 RHCGQ9UBD6 479 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 A4GNTQ9UNA3 340 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 POFUT2Q9Y2G5 429 aa14.17□□□□□ -0.14
LSM1-201ENST00000311351 RNF223E7ERA6 249 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 J3KTA2 159 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 GSTA4O15217 222 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 SSX4O60224 188 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 F13BP05160 661 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 CBR1P16152 277 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 APOBEC3AP31941 199 aaPredicted RBP14.16□□□□□ -0.14
LSM1-201ENST00000311351 PSME3P61289 254 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 C3orf36Q3SXR2 165 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 VHLLQ6RSH7 139 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 MEX3DQ86XN8 651 aaKnown RBP14.16□□□□□ -0.14
LSM1-201ENST00000311351 FAM169BQ8N8A8 192 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 RBM15BQ8NDT2 890 aaKnown RBP14.16□□□□□ -0.14
LSM1-201ENST00000311351 OR6X1Q8NH79 312 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 LZICQ8WZA0 190 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 TMEM54Q969K7 222 aa14.16□□□□□ -0.14
LSM1-201ENST00000311351 HSH2DQ96JZ2 352 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms