RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PRAMEF26H0Y7S4 382 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 TNFSF12O43508 249 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 EIF4EP06730 217 aaKnown RBP11.86□□□□□ -0.51
COL3A1-201ENST00000304636 MAGEB1P43366 347 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 POLR2HP52434 150 aaKnown RBP11.86□□□□□ -0.51
COL3A1-201ENST00000304636 AANATQ16613 207 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 MRPL21Q7Z2W9 205 aaKnown RBP11.86□□□□□ -0.51
COL3A1-201ENST00000304636 CALHM3Q86XJ0 350 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 LILRA3Q8N6C8 439 aaPredicted RBP11.86□□□□□ -0.51
COL3A1-201ENST00000304636 ZNF511Q8NB15 262 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 SLC16A11Q8NCK7 471 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 PFN4Q8NHR9 129 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 CMC2Q9NRP2 79 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 TRAV36DV7A0A075B6V5 113 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 LOC102725191A0A1B0GVB3 256 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 PRAMEF27A3QJZ7 478 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 P2RX3P56373 397 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 CLDN2P57739 230 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 PDZK1IP1Q13113 114 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 PRAMEF9Q5VWM5 478 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 SLC39A5Q6ZMH5 540 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 FAM57BQ71RH2 274 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 ZBTB44Q8NCP5 570 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 OR10Z1Q8NGY1 313 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 ZNF578Q96N58 590 aaPredicted RBP11.86□□□□□ -0.51
COL3A1-201ENST00000304636 C8orf33Q9H7E9 229 aaPredicted RBP11.86□□□□□ -0.51
COL3A1-201ENST00000304636 ERVMER34-1Q9H9K5 563 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 TUBG2Q9NRH3 451 aa11.86□□□□□ -0.51
COL3A1-201ENST00000304636 A0A0U1RQK1 487 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 TRIM64BA6NI03 449 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 SNRPGP15A8MWD9 76 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 SUSD5O60279 629 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 TK1P04183 234 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 SERPINA7P05543 415 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 SRPXP78539 464 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 MLC1Q15049 377 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 MEP1BQ16820 701 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 PRSS36Q5K4E3 855 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 TEX261Q6UWH6 196 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 PLPP5Q8NEB5 264 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 OR14L1PQ8NHC6 308 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 STACQ99469 402 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 HRASLSQ9HDD0 168 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 FBXL4Q9UKA2 621 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 U3KQ87 197 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 DUSP3P51452 185 aaPredicted RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 RPS18P62269 152 aaKnown RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ZNF750Q32MQ0 723 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 TCTN3Q6NUS6 607 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 LIX1LQ8IVB5 337 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 CRB3Q9BUF7 120 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ANKRD36CQ5JPF3 1778 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 CIB4A0PJX0 185 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 HSBP1L1C9JCN9 74 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 LILRB5O75023 590 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 F11P03951 625 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 RAD52P43351 418 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 NFATC4Q14934 902 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ESPNLQ6ZVH7 1005 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 KDM8Q8N371 416 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 NANOS1Q8WY41 292 aaKnown RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ATF6BQ99941 703 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 DDX60LQ5H9U9 1706 aaKnown RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ALS2Q96Q42 1657 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 A0A1B0GTL3 188 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 M0R082 166 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ADAM10O14672 748 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 BCL6P41182 706 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 TAS2R30P59541 319 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 SNTB1Q13884 538 aaKnown RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ZNF266Q14584 549 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 IAH1Q2TAA2 248 aaPredicted RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 HIST2H3AQ71DI3 136 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 MFSD4AQ8N468 514 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 RBMXL1Q96E39 390 aaKnown RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 LYSMD1Q96S90 227 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ACOXLQ9NUZ1 547 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 N4BP2Q86UW6 1770 aaPredicted RBP11.85□□□□□ -0.51
COL3A1-201ENST00000304636 AIPO00170 330 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 THBS1P07996 1170 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 RFX2P48378 723 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 EMP3P54852 163 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ERVK-16P61578 105 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 NKG7Q16617 165 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 ACOT7LQ6ZUV0 252 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 OR52H1Q8NGJ2 320 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 VN1R3Q9BXE9 311 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 EMC9Q9Y3B6 208 aa11.85□□□□□ -0.51
COL3A1-201ENST00000304636 MYO10Q9HD67 2058 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 PMP2P02689 132 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 PAN3Q58A45 887 aaKnown RBP11.84□□□□□ -0.51
COL3A1-201ENST00000304636 PLPP7Q8NBV4 271 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 ASB13Q8WXK3 278 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 ARRDC3Q96B67 414 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 C14orf79Q96F83 325 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 OR2A14Q96R47 310 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 HINT2Q9BX68 163 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 SAMD10Q9BYL1 202 aa11.84□□□□□ -0.51
COL3A1-201ENST00000304636 ASPDHA6ND91 283 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms