RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 VSX1Q9NZR4 365 aaPredicted RBP12.65□□□□□ -0.39
SS18-201ENST00000269137 SSUH2Q9Y2M2 353 aa12.65□□□□□ -0.39
SS18-201ENST00000269137 MSRB2Q9Y3D2 182 aa12.65□□□□□ -0.39
SS18-201ENST00000269137 NOX1Q9Y5S8 564 aa12.65□□□□□ -0.39
SS18-201ENST00000269137 KCNMB2Q9Y691 235 aa12.65□□□□□ -0.39
SS18-201ENST00000269137 DCHS1Q96JQ0 3298 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 ACACAQ13085 2346 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 ASPMQ8IZT6 3477 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 AQP7P3A6NL99 342 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 ARHGEF9O43307 516 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 TLX3O43711 291 aaPredicted RBP12.64□□□□□ -0.39
SS18-201ENST00000269137 SLC34A2O95436 690 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 HLA-DOBP13765 273 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 SPINK2P20155 84 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 LIPAP38571 399 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 TNFSF10P50591 281 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 GFRA1P56159 465 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 CSNK2A1P68400 391 aaPredicted RBP12.64□□□□□ -0.39
SS18-201ENST00000269137 DBPQ10586 325 aaPredicted RBP12.64□□□□□ -0.39
SS18-201ENST00000269137 C1DQ13901 141 aaKnown RBP12.64□□□□□ -0.39
SS18-201ENST00000269137 MED22Q15528 200 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 ARMCX4Q5H9R4 360 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 LINC01590Q5TEZ4 76 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 SLC35D2Q76EJ3 337 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 ZFP62Q8NB50 900 aaPredicted RBP12.64□□□□□ -0.39
SS18-201ENST00000269137 OR2T4Q8NH00 348 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 ASB10Q8WXI3 467 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 BCL7BQ9BQE9 202 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.64□□□□□ -0.39
SS18-201ENST00000269137 ERVK13-1Q9NX77 482 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 QPCTLQ9NXS2 382 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 ENPP5Q9UJA9 477 aa12.64□□□□□ -0.39
SS18-201ENST00000269137 A0A0J9YW62 118 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 NPIPA5E9PKD4 350 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 BCL10O95999 233 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 IFNGR1P15260 489 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 PCSK6P29122 969 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 TGFBR2P37173 567 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 MEOX1P50221 254 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 AGFG1P52594 562 aaKnown RBP12.63□□□□□ -0.39
SS18-201ENST00000269137 WNT4P56705 351 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 ZNF766Q5HY98 468 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 WIPI1Q5MNZ9 446 aaPredicted RBP12.63□□□□□ -0.39
SS18-201ENST00000269137 EEF1A1P5Q5VTE0 462 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 ASB18Q6ZVZ8 466 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 LHFPL3Q86UP9 236 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 ERI1Q8IV48 349 aaKnown RBP12.63□□□□□ -0.39
SS18-201ENST00000269137 GHDCQ8N2G8 530 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 TMEM178AQ8NBL3 297 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 ZNF485Q8NCK3 441 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 OR52N1Q8NH53 320 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 ZNRF4Q8WWF5 429 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 SLC39A7Q92504 469 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 ZMYND19Q96E35 227 aaPredicted RBP12.63□□□□□ -0.39
SS18-201ENST00000269137 OXGR1Q96P68 337 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 CNN2Q99439 309 aaKnown RBP12.63□□□□□ -0.39
SS18-201ENST00000269137 ALG12Q9BV10 488 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 NAA50Q9GZZ1 169 aaKnown RBP12.63□□□□□ -0.39
SS18-201ENST00000269137 ISYNA1Q9NPH2 558 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 NPIPA1Q9UND3 350 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 RASD1Q9Y272 281 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 PCDHGB7Q9Y5F8 929 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 FKBP7Q9Y680 259 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 ZFHX4Q86UP3 3567 aa12.63□□□□□ -0.39
SS18-201ENST00000269137 SLC22A23A1A5C7 686 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 TRIM64BA6NI03 449 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 C12orf71A8MTZ7 269 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 H3BMQ9 156 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 NOL3O60936 208 aaKnown RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 VAMP5O95183 116 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 SCG5P05408 212 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 CD36P16671 472 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 ACTC1P68032 377 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 ACTA1P68133 377 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 POU3F1Q03052 451 aaPredicted RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 MLLT11Q13015 90 aaPredicted RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 DOC2BQ14184 412 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 SLC16A12Q6ZSM3 486 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 ESPNLQ6ZVH7 1005 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 GGNQ86UU5 652 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 ZBTB46Q86UZ6 589 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 UEVLDQ8IX04 471 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 OR6V1Q8N148 313 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 TMEM251Q8N6I4 163 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 OR51L1Q8NGJ5 315 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 SMPDL3BQ92485 455 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 C12orf43Q96C57 262 aaKnown RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 OPALINQ96PE5 141 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 TSSK2Q96PF2 358 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 NAA11Q9BSU3 229 aaPredicted RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 SYT4Q9H2B2 425 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 CAB39Q9Y376 341 aaPredicted RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 ZNF814B7Z6K7 855 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 H7C1C5 153 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 DCTN6O00399 190 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 GABARAPO95166 117 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 OR2T7P0C7T2 308 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 HSMCR30P0CW71 290 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 PYCR1P32322 319 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 CENPAP49450 140 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms